RNA id: CI01000350_00110973_00120683.mRNA


Basic Information

Item Value
RNA id CI01000350_00110973_00120683.mRNA
length 4067
RNA type mRNA
GC content 0.42
exon number 13
gene id CI01000350_00110973_00120683
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 108898 ~ 120683 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAGTCTAGTTCTGCCACTGTCAAGACTGCATGCATTTTTTTATTTTCATTGTAAATATGGTTCATGTGTCAATTTTAGAGATGCAGAAAAGTGCCTAGGTGTTAAAATGTGTTATCATTATCACACTATAATAGGGAGAGTGGGGTAAGATGAGCCATTTTTCACTTATGTGGTCCTCACGATAAGGAAAAATGAGGCAGAAGTACAATGAAAGTATTTAAAGTAATTTCAGGATGTTTCCTATCATTTAAGTGACCAGAATAGTTCTATGACAAAGGGTTCTAAAAATATGGCTTCTTATAAAAAAGTGTTCCTGTGGCTCAATTTACCCCAGGTTAGGGGTAAGTTGAGCCGAGTCAGTAGGTGGGTGTAAACTGACCATCTAACTGAATCTGAATCAAACCCATGTAAAAATTTTTAAGATAACCTCTTTTAAAAGATTACCTCTTTTGAAAACTAATTTAATAATCAAATATTCGTTTACAAATATTTATATTTCTTTTCTTAAAACTACCTTAAACAACATAAAACCAATCAAATGAAGTTGAAATTTCAATATCTTTAATTGTTCGCATTTCTGAAACAATATGTTGAACACCAAAGTAACCTTCCCAAAAACAGACTAAACAGAGAATTTGAGTAAAATTAAGTAAAAACTGAATTAGAATGAATAAATGTTACTGAAACTAATAAATATTTTAGCTAAAATGTTCTTGACATGGTAGTTTTTCTGCAATGTTGACCATGTTAGGCCATTAGAGACTACTGGTGGAAAGATATAAATGATGAAACATCTTCTGGTTCATATCAGAGAAGGATTTGGTGTACTTCATCACTGTTCCTATCAAATAAACAAAAAAAAAAAAACAAAAAAAAAAAACCCAGCTGCATAATATTACATTGAAATTATAGCAGTTTATACTTCAGAGATTTAACTTGCACTGTAAATGCATTGCCTTATGGTGGGGTAAACACTGGCTCAATTTACCCCACAGCATTTGGCTCACTTTGCCCCATAGCTGCCATTTTGGGAAAAACAAGCTAGCTTACCAATTCAGGATAATATTTAGCTAAATGATTTGCATGATTTTATACATGGCTAAATCACCAATATGATTCATAAATATTTTTAGACATGGAACAATTTGCTTTGATGTAACAGCAATTACATCTGTTATGTTCAAATTTTACGTTGACAAGCCAAAAACAGCTTTTGAAGTAAACTGGCGCCTTCCACTCCTCCCATGTGCTTCTCCTTTTCACAGTCTGGCAGAAATAATGGGTAGTTCCAAAATATATGGTCACATGGCAATAAAAGGGTACGGTTGCCAAGATACAGGGGGTGGGTCAACTTACCCACTGGCTCATCTTACCCCACTCTCCTCCTACATAATTACTTGTCAAATAAATGAACATGAAACATTCATTTGAGCTGAAACTGTATTTGCTTACTTCTACAGATCACAGAGTGTGACATGGTGAAAAGTGAACTGAAATAATCCTGGTGAAGGTATAAATGTTAAAGTGTGGCCCAGTCACTGATCTCAGATGAGTTTTATAAATTTGTAATGACATATTTATATAATAAAAAGGAAGATTAGTAGTTAATAATCTTATTATTGGCCTGTTTAGCCAAACCGTCCATAAAACAAACGAAACAAACACGGCAAATTAATAAAAGAACACGTATTATACAGACACTACATATTTAATGCCTTGTTATTTTTAATGAATAGATTACACTTTAAATAAAACACTTGCGATTGGTCTGCAAAGGTGTTTTATGCATGTTTTGGTTGATTTTACCCCGTTCTGACCAGCAGGAGTTTCGAGCGCTTCCAAACGCAGAATCATTTTGAGCAACTGGTTTAATTTATTCCGAAAGTTCCGAAAAGTTTCGTTTGCCGAACTGTGCTCGTGCTGCCATCCAGTGGCGTTCACGAGACCTGCGCCGCGCCTCCGTGGCGTCATCAGCGCGCGCCGGCCGGGCACGAGGAGGAGCGCATGTTGGAGTTGACGCGTCGCGTGTGAGGGCGAGCAGCAGCAGCAGCACGTGAAGATCAACAGAAATGGAATCGACACAAAAACCCGAAATCATCTTTGCAGTAAAGCTCGCGTCCAACGAGAAGCCCGTCAGGAGTAAAGCCTTACTGAAGCTCCGGAAGTACATCAGTGCGCGCTCTGGGAGAGAGGAGGGTGGTTTTGGTGAGGATGAGCTGCTGAAGATCTGGAAGGGTCTGTTCTACTGTATGTGGATGCAGGACATGCCACTGCTGCAGGAGGAACTGTCGACTAAGATCTCCAGGCTCCTCCACAGCTTTCAGACCGTCGACAGCCAGCTCCTGTACTTTAAGACGTTTCTGCAGACCATGAAGAGGGAGTGGAACGGCATCGACCGGCTCCGAATGGACAAGTTCTACCAGCTTGTCCGCTTTGTTTTCCGAGAAGTGTTTGAGATGCTGAAGAGACGGAACTGGGAGTCGAGTGTGGTGAGTGAGTTCCTGCAGCTCTTCACGGCTCAGCTCCTGCAGAGCTCCAGCGCCGCTCCGGCCGGACTCAATCTCCATGTGCTCGAACTCTACACCACTGAACTGGCCCTCGTCGGCTCCACGCAGCTGACTGCAGAGCAGAACCTGACCTTCATTGAGCCTTTCTGCAAGGCCATGGCCAAGACCAAAGATCGGGTCCTGCTGAAGGCCATCAGCAGCAGTGTCTTCAACACCATTGTTGATCAGGTTCCCTTCGCCATCGAGGATCTGCTCAGAGAGATTCGTCAGGGTGACGAGGAAGAACAGGACGCTAGTGACGAATCTGAAGACCAACAGGACAGCGAAGAGCTGAAGACTAAATCCCGCTCTAAAAAGAAAACTGAAGAATCTGCAGAGGACTGTGATGAAGATAACTGTTCACTTCCAGACGACATGGATAGTAAAGATAATGAAGATGATGAATGTAGACCAGTTCTTCAGTTTGACTATGGTGCAATAGCTGACAGACTTTTTGAGCAGGCCAGTCACTCAAATATACCAAGCTTTAACCGATCCAAGATTTACAAGTTCGTCAAAATTTTCCGAGACTTGAGCGAAGGCGCGTTCCCCCAGGATGAAGTAGAGGACGTGTCCACTGATGAAGATGACTTTGACGACAGCAGACGGAGAAAAAAGAGAAAGAAACAAACAAATAAAGGCCAGAAAGAACAGGAGTCACTGAAGAAATCCAAAGGTCAGTCGGAGACAGCAGCTGACACATCAGAGGACACAAAACAAAAAAACAAGAAAGGTAAGAAGAAAAAGAGAAAGAACAGAAGTTTGAAGAGTGTTGAGGGAGAGACGGAGCAGCAGACAGATGCACAAACACCGGTCGAGCCCTCGAACCCTTCAGAGGTCAGACGAGAGACACAGGACTCAGAGAAAGCCAAGTCTAATGCTAAACTATCAAAATGTGACGGTGAAAACATTCCTGACGAACAACCAAATGGTCTTGGCCTTAAGCTGCTAAAGAAGAGAGGGAGGAAGAAGACTCGTGAAGATGCATCAGAAGCAGCAGCCGACGACTCCGAGACGGTAATCGGCTCTACATCAGCAGAGGTCGTTACTTCTGCTCCTCTGAAGAAAAAGAAAAAACTGCTGAAAAAGGCGAAAGACGTTGGTGATGGAGAAAAGGAGCATGATGGACAAGCAGAAGTGAACTCTGTTTCTGTGCTAACATGCTCGATCTCAGCAGGCGTGGAGGAGCCGTCAGCGGTCACTCCATCAAAGAGGAAGAGCACAGCAAGAAACGAAAAAGTCAAAGAACAGCAGGATTCACAGGAGACAGGCTCCTCTAAAGCCTTGAGAAAAACACTGATGAAGAAGAAGAAGAAACAGAAGGATGTAGTTGTAGATGTTCCAGAGCCAAACACCAATGGAGAAGCTCATCAGGAGGTTGAGAGCGTTCACACTGAAGAGTCACGGCAGCCAGATGGCCGTACAGAACCGACAACTGCGAACATGAGAGCGAAGAAGAAGAGGAAGCAGAAATCAGAAGAGTCCGCTGACCAGATCAAACCGAAGAAGGTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA downstream 4799 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 29591 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 29591 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 41956 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 57107 177790 ~ 180852 (+) False G506680
CI01000350_00095230_00102190.mRNA mRNA upstream 6324 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00048651_00049682.mRNA mRNA upstream 58432 48443 ~ 50466 (+) True CI01000350_00048651_00049682
CI01000350_00014076_00015551.mRNA mRNA upstream 92984 14076 ~ 15914 (+) True CI01000350_00014076_00015551
CI01000350_00133984_00139525.mRNA mRNA downstream 13301 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00140280_00143769.mRNA mRNA downstream 19470 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00146107_00147209.mRNA mRNA downstream 25233 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00249103_00250406.mRNA mRNA downstream 128420 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 139946 260629 ~ 261809 (+) False CI01000350_00260761_00261744
TU581079 other downstream 378413 499096 ~ 500756 (+) True G506786
TU581251 other downstream 644627 765310 ~ 766111 (+) True G506911
TU581186 other downstream 857408 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1333880 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1334203 1455782 ~ 1455902 (+) False G507676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072581 True 2022 mRNA 0.54 17 NC_007120.7 145093 ~ 153070 (+)