RNA id: CI01000350_00133984_00139525.mRNA



Basic Information


Item Value
RNA id CI01000350_00133984_00139525.mRNA
length 1165
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000350_00133984_00139525
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 133984 ~ 139964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAGTAGCATGGCAAGAGAGATCCTGGCGTTTATACTCACTACGTCGGGCTGGGTGCTGGTGTCCTCCACTTTACCTACAGACTACTGGAAGGTGTCTTCAATCGACGGCACAGTTATCACCACAGCCACCTTCTGGTCCAACCTGTGGAAAACTTGTGTGACTGATTCTACTGGAGTGTCCAACTGCAAAGACTTCCCTTCAATGCTGGCACTGGACGGTTATATCCAGGTGTGTCGAGGTCTGATGATCGCTGCCGTCTGTCTTGGTTTCTTTGGATCTATCTTTGCTCTGATCGGCATGAAGTGCACTAAGATCGGTGGTCTTGATGAAACCAAAGCCAGAATCGTCTCCTTTGCAGGGCTCAACTTTGTTTGTCTTGGTCTGTGCTCTCTGACCGCCTGCTCCCTCTACGCTCACAGGATCACCTCTGAGTTTTTCGATCCTATGTTTGTTGCGCAAAAGTATGAACTGGGCGCCGCGTTGTTCATCGGCTGGGCGGGATCGACGCTGTGTATCCTCGGAGGAGCGCTGTTCTGCCTCTCGCTGTCTGAAGGCATGAGCAGCAGCAGTTCGCCGTATCCGTCGGACAGAAGGGCTTTTGTCAACAGCGGAGTCTCTGTAATGTCCCGTGCGGCACCACGGAGTCAGTCGTCACACGCGAGGAGACCTCTGCCAGAATACACCAGCCCTTCACAACAATTCGACAAGAACGCCTACGTGTAACACAGTGCTGAAGTATGGTGTAATATCTCGTTGGGTTTTGTCGCTCTTTTAGTGCCTTGGGATGGCCAGCACATGTTGTGTATCAGATTTGGTCAGGATTATTATTTGCCTCCTACTGTGATTTCAGCAGCATGTTTATGTTTACGCAGCACTGCATGAGATCATGTCATCTGTTGATAGTTGTGTTGTGCTCCACCATTTCGGGTGATTATTCATTTCTGGCAGTATGTGGTGTTGATCAGTACATCAGTCCCGGTCCAAAGCAGGACAAACAGAATCAGGTTTCAGGAGACTGTCGAATGAAATTACATTTCAACACAGATTTGAGTTTCAATATTATTTGAATTTCTAACTTCAAAGATTGTATTGCCTGTTTTGCCAAGCCTCAAAAATGAATGTGATTAAGAATGTTTTTTGTTCTTGTTGTTGTTGATGTTTA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU580928 lncRNA upstream 8261 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 10310 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 10310 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 22675 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 37826 177790 ~ 180852 (+) False G506680
TU580938 lncRNA downstream 38002 177966 ~ 180613 (+) False G506680
CI01000350_00110973_00120683.mRNA mRNA upstream 13301 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 31410 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00048651_00049682.mRNA mRNA upstream 83518 48443 ~ 50466 (+) True CI01000350_00048651_00049682
CI01000350_00014076_00015551.mRNA mRNA upstream 118070 14076 ~ 15914 (+) True CI01000350_00014076_00015551
CI01000350_00140280_00143769.mRNA mRNA downstream 189 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00146107_00147209.mRNA mRNA downstream 5952 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00249103_00250406.mRNA mRNA downstream 109139 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 120665 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 125308 265272 ~ 276791 (+) True CI01000350_00266537_00276376
TU581079 other downstream 359132 499096 ~ 500756 (+) True G506786
TU581251 other downstream 625346 765310 ~ 766111 (+) True G506911
TU581186 other downstream 838127 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1314599 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1314922 1455782 ~ 1455902 (+) False G507676

Expression Profile