RNA id: CI01000350_00140280_00143769.mRNA


Basic Information

Item Value
RNA id CI01000350_00140280_00143769.mRNA
length 951
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000350_00140280_00143769
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 140153 ~ 143804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTTATAGTAAACCAGCGTCACGATGTGTGTACAAACACAACATCCGTCCCTTCAGGACGGTTTCTTAAAGGTCAGACCGCAAACTGCTCTCCTCCGCTGAAGAATCGACCATGTTTGAGTGAGAATGAGCGTATGCTCAGATGACAGAACGATGAGGAAAAGTCTGATACAGGTGTTTGGATTCTTGTTTTCCACCCTCGGCTGGCTCTTCGTCAGCTGCACACTAGCCATGAACTACTGGAGAGTCATCTTTGTAGGCGGCAAAGGCGGCAGCTGGATGATCAAGTCATCCTGGTATTGGTCAAACCTGTGGAGGGACTGTGTGACGGACACGTCTTCTGTCACGAACTGCAGAGACTATGATGTGCTGTGGGCTGTCACACCGTATGTTCAGGGCGTCCGAGGGCTGCTGATGGTCGGCATGAGTCTAGGGTTCGTCGCTGCTGTGCTCTGCTTCATCGGCATGGACTGCACATACATCGGTGGAAGTGGGAAAACAAAGGATAAAATATTATTCTCCGGAGCAACTTTTCATTTTGTCGGTGGTGTGTCAGCGCTTGCGGCGTATTGTTTATACACAAACAGGGTCGCCAGCACTGCCTTTTCACCTGCTGTCGACAGAAGTATTATAAGGTATGGGATTGGAACTCCGATATTCCTCGGATTGGCCGGAAGTTTCTTTATAATTCTTGGATCTATTTTATATGCAGTGACAGTCATCCCAACGAGAATATTGAGTGCGTTTGCAGCGAGTGCAGCAGAAGCTCCTCCGTCGTACGGCCAGCGGACGGCCGGTAAATCTCTCTACACTACTGCATACTACGCTCCGTCACAACGCTCCAGTGGCTCTCGCGGCTCTCGCATCTCACACATCACAGCGGAGAAAATATCTGCCAGAGACACCTTTGTGTGAAACCTTAAAAGAGCTCTGTAACATGACAACCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA upstream 14430 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 6470 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 6470 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 18835 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 33986 177790 ~ 180852 (+) False G506680
TU580938 lncRNA downstream 34162 177966 ~ 180613 (+) False G506680
CI01000350_00133984_00139525.mRNA mRNA upstream 189 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 19470 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 37579 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00048651_00049682.mRNA mRNA upstream 89687 48443 ~ 50466 (+) True CI01000350_00048651_00049682
CI01000350_00014076_00015551.mRNA mRNA upstream 124239 14076 ~ 15914 (+) True CI01000350_00014076_00015551
CI01000350_00146107_00147209.mRNA mRNA downstream 2112 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00249103_00250406.mRNA mRNA downstream 105299 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 116825 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 121468 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 133369 277173 ~ 279752 (+) True CI01000350_00277505_00278977
TU581079 other downstream 355292 499096 ~ 500756 (+) True G506786
TU581251 other downstream 621506 765310 ~ 766111 (+) True G506911
TU581186 other downstream 834287 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1310759 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1311082 1455782 ~ 1455902 (+) False G507676

Expression Profile