RNA id: CI01000350_00146107_00147209.mRNA


Basic Information

Item Value
RNA id CI01000350_00146107_00147209.mRNA
length 860
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000350_00146107_00147209
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 145916 ~ 147275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATAATAAACACAGTGTTTGAGAGTGGCATTGATGACACCACAAACAAGCAGTGTCCTCCACCCTCAGACCAGTGAAAGCATTAGATCCCTTCAACACCTTACGGAAGGTGCGTTTGTCTTCTCGCTGAGTTAAGATCTTTAAAAGATCTTCTATATTTTTATCTAGCTGCATCAGGCACATCCCAGCATGCATTACAGAACGGTGCTGATGTACACTGAAATAGGCTGCTTTGTAGCGTGCGTCTGCGGCTGGATCTTGGTCTGCTCAACTATGCCGACGGAATACTGGACTTACTCTGAAGTGGACAGTTTAGTCCTCACGTCTTCTCACTATTTCTCCAACCTCTGGAAGGACTGTCTCTCCGACTCCACCGGCGTCTCCGACTGCAAAGAGTTTCCCACGCTGCTGGCTCTGCAGACATACATTCATCTGTGCCGATCTCTCGTCATCACATCCATACTTCTGGGATTCTTCGGATCCGTTCTGGCATTGGTGGGGATGAAGTGCACCAAACTCGGAGGCTCTGAAATTGTGAATGCAAGAATAACCTTTGCTGCAGGGATCACCTACTTTCTATCCGGTTTCTGCGGTATGTTTGCTTACAGCTGGTACGGCCACAAGGTGATTTCTGAGTTCATGGATCCCAACTACAAGGCCAAAAAGTTTGAGCCGGGAGTGGCACTGTTTGTGGGCTGGGGTGGATCGGCGCTCCTGCTGGTCGGAGGACTCGTTTACAGCATCACTGCAGGGAACCAGGCCTGCCAATCCAGGTATCAGCACACAAAATAATAACCTGTACATCTAAGTGTATCGCACAAAGACATCTTTCAATCACAAAATGTGTGATATTGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA upstream 20193 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 2999 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 2999 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 15364 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 30515 177790 ~ 180852 (+) False G506680
TU580938 lncRNA downstream 30691 177966 ~ 180613 (+) False G506680
CI01000350_00140280_00143769.mRNA mRNA upstream 2112 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 5952 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 25233 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 43342 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00048651_00049682.mRNA mRNA upstream 95450 48443 ~ 50466 (+) True CI01000350_00048651_00049682
CI01000350_00249103_00250406.mRNA mRNA downstream 101828 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 113354 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 117997 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 129898 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 151987 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 351821 499096 ~ 500756 (+) True G506786
TU581251 other downstream 618035 765310 ~ 766111 (+) True G506911
TU581186 other downstream 830816 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1307288 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1307611 1455782 ~ 1455902 (+) False G507676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072584 True 1212 mRNA 0.51 4 NC_007120.7 163662 ~ 166125 (+)