RNA id: CI01000350_00266537_00276376.mRNA


Basic Information

Item Value
RNA id CI01000350_00266537_00276376.mRNA
length 2607
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000350_00266537_00276376
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 265272 ~ 276791 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATATACAAGTTTGCATGTATTTTTCATCACATTTCATATAAACAGTACACACACACACACACACACACAGCAGCAGCATCATATTTATACATCTGGGAATTATACATCTGAATATATACTCAGCCCGCTGCTTTTTACCCTGTTGACCCATGATTGTGTACCTAATCACGATACGACAGTAGTGGGCCTCATCACTAACAACAATGAATCCAACTACAGGACTGAAGTGAGCCGACTGGTCCGGTGGTGTAATGACAACAATCTCTTCCTCAATGTGGCAAAGACCAAAGAACTTATCATCAACTTCAGATGATTAAAGAAATTAAGCCGGCTTTACTGACAAAACAAAATAAACAATAAAATCAACCAAACAACCAACATACAATTGTCAAAAGAGAGTGTACCACTTCCTCTAAGATAAATGTCTGCTAAAGTTGGTTACATTCTCAAGTTTTCAGTCCTGTTGTGTGTGGAATGTCATTTAAATCGTCTTTCCCTCTTGTTGAGGAAATCAAGAGAGTTCAGTCCTTATTAAAACAAATCCAAGTCAACAGTAATCCTACACTCTGGTTGAGAACGTAAATGAATCTCTCTTCCTTCTTGTCTTTGTTCTTTCTTTAGGTTCTTTCATGTGTTTCACTCACCATCTCAATAACTGAAGAAATCCAGTGATGCATCAGTAAGGGAAGAAAAAAATACACATATACTATATACACACATTTTCATCATATATAATGTTGTATATTATTTAGATGTGCAGATCTGAATCTTGTTTACTGCAGTGCATGCCTCATGTAGAAGGTAAATGTCTCATCTTGAATAAAGACAGAACATGCAGGAGAGTTCATGAAGATTCATTTAATTATAGGATGAACCGGGCAACACCTGACCCACAGAGCTGGTCGTACTTTATTCTCGTTTTGTGATGATTTTGTCATCAGTGTAACAGGTATAGAAATTACACTGTTAAATATATGTTCTGTTGAGAAGAATTCACACAAAACTGTTCATTTATATGTCTTATGTGGTTACCTGATCAAAATGAGTGCTTCTCCTTTAAGTGTTGTGTGTTCACAAGATGACTTCACTTCCTGTTCTGTCTCCTCCTCTTCCCTTTTATATTGTAACCTAATGGGAGAGGTAGGTTTCTTTTGATTTCCTGATAATCATTTAATTTAATATAATTAATTTTAAAACTGGGCGGAACCAATAGCGCTTAAATGCCCTGTTCCGGCCGGACTCCAATTTTCGTGACACCAGGATGCGGCCGCAGCAGACCATGTTGAAAGATCGCCACACGTCAACGAGGACGGGTGTTGATAAATGGCAGTGGTCTTCAGGTGATTCTGTGCTCTATCTGAACTGGGCTCCTGGACAACCTGAAGGCACAGATGAGTGTGCTATGATGAGAAATGGACAGTGGGGAGATTTGCCATGCAGTAACAACCTGACTTTCATCTGCGATTCATCTAACAACACGAACAGAGGACTCGTCTTTATCAATCAGACGATGAATTGGAGAGATGCTCAGAGATACTGCAGACAGAATCACACTGATCTGGTCAGTGTGAGGAACCAGATTGAGAGTCAACAGATTCAGAAGTTCATCAATGATAGTCTCATATCTGGTGATGTCTGGATCGGTCTGTTCAGAGACTCATGGCAGTGGTCAGATCAGAGTAACTCCTCATTCAGATACTGGTATCCTAATCAACCTAATAATAATAGAGGTCAAGAAAACTGTACAATTCTCGAACACGACACTCTTAAGCGATGGGGTGACAACACTTGCAACAGCCAATTACCTTTTGTGTGTCATGAAGATAAACTGATCCTGATCAAAGAGAATCTGACGTGGCCTGAAGCTCTGAGATACTGCAGACAGAATCATATGGATCTGGTCTCGGTTCATTCAGAAGAGATGCAGCGTCGTGTGATGAATGTGGTTAAACGGGCGTCTACTGAGGCGGTGTGGTTGGGTTTACACAACTGCTGCAGCCTGAACATGTGGATCTGGGTCAGCGGAGACATCGTGTACTATCAGAACTGGGCTCCATGGAACGGAACGACACCGGAAGAGTGCCGCCTCGAGAAGAGAAAAGGAGCAGTTCAGTCTGGAGGAGATCAGCGCTGGATCAGCCTTCCTGAAACTCGCAAACTCAACTTCATCTGCAGAAACGATGAGTGAATGTTTGTGTGTTTACTTACATTCACTGTTTTCATACTTCATTATTTCTCTTATTTACTTGTATTTGTTTTAGTAAGTCCTGAGTGAATCTGCTAACTGCTACATTTTTATCATAATATTTAAAAAAAAAAAAAAAAAAAAAAAAATTAACATTAATGTTTAATATTCTTCAGATGTTAAGTGTGTTTTATAAATCTCTTTGTATATCTGGTGTGGTTACGTCTCTTTATGTTTTCACTAACAATAACTGGTTGAATGTGAATCTGTGAGCAGCAGCTCTTCAGAATAATATTGTTTGTGTCTCAGAATGAAATCTGGTTTATTCTTAGAAAAGCTGAAGTGAAGGTTGGGTATAAAACATCTTGTGTTTGATCAAAACCATCAGATAAACATGTGAAACAGAACATCAGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581001 lncRNA upstream 4399 254550 ~ 254601 (+) True G506714
TU580977 lncRNA upstream 34909 227019 ~ 230363 (+) True G506699
TU580967 lncRNA upstream 46578 218204 ~ 218694 (+) False G506694
TU580965 lncRNA upstream 46578 218338 ~ 218694 (+) True G506694
TU580964 lncRNA upstream 46611 218338 ~ 218661 (+) False G506694
TU581043 lncRNA downstream 97125 373916 ~ 374298 (+) True G506752
TU581051 lncRNA downstream 114920 391711 ~ 391925 (+) True G506760
TU581067 lncRNA downstream 198334 475125 ~ 562627 (+) True G506775
TU581133 lncRNA downstream 293485 570276 ~ 570843 (+) True G506807
TU581129 lncRNA downstream 294371 571162 ~ 571997 (+) False G506804
CI01000350_00260761_00261744.mRNA mRNA upstream 3463 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00249103_00250406.mRNA mRNA upstream 14644 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00146107_00147209.mRNA mRNA upstream 117997 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 121468 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 125308 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00277505_00278977.mRNA mRNA downstream 382 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 22471 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00324715_00343520.mRNA mRNA downstream 47924 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00361432_00364007.mRNA mRNA downstream 84641 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00457534_00503845.mRNA mRNA downstream 180266 457057 ~ 503965 (+) True CI01000350_00457534_00503845
TU581079 other downstream 222305 499096 ~ 500756 (+) True G506786
TU581251 other downstream 488519 765310 ~ 766111 (+) True G506911
TU581186 other downstream 701300 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1177772 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1178095 1455782 ~ 1455902 (+) False G507676

Expression Profile