RNA id: CI01000350_00299478_00304914.mRNA


Basic Information

Item Value
RNA id CI01000350_00299478_00304914.mRNA
length 1976
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000350_00299478_00304914
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 299262 ~ 305567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAGACGGACAGAAACATCAGACTCAGGACAGAAACACACGACCTCTAAAGTAAGAACAACTTCTTTCTTTAACCACAATTAGACTTTGAGATGTTAATATGGTCTTAATGATCGTGAATCGAGTTATGCTGCTAAATTAGTATATTTTTTCATACTTTTATGTTTAACTTTTATTACACCTACGCTCCATTCTCACATTTCTTCTTCAGAAATGGACCAAACTCTCTATTTCATTCTTCTTCTCATTGCTCTCTGCTCCGTATCTGAATGTGTTCAGCGTCAGTATCACTTTATAAACGTGAGGAAGACCTGGACTGAAGCTCAGAGATACTGCAGAGAGAATTACACAGATCTGGCCACCGTTGACAACATGAACGACATGAACGAGCTGAAGAAGAGTGTGAATGATGGAGGTGTCTGGATTGGGCTGCAGAGGACGGGTGTTGATAAATGGCAGTGGTCTTCAGGTGATCCTGCGCTCTATTTGAACTGGAGACCTGGAGAACCTGAAGGCAGAGATGAGTGTGCTATGATGAGAAATGGACAATGGCATGATTATCCATGCAATAACAGCCTGACTTTCATCTGCATTTCATCTAACAACACGAACAGAGGACTCGTCTTTATCAATCAAACGAAGAATTGGAGAGACGCTCAGAGTTACTGCAGACAGAATCACATTGATCTGGTCAGTGTGAGGAACCAGAATGAGAATCAACAGCTTCAGAAGTTCATCAATGATAGTCTCATATCTGGTGATGTCTGGATCGGTCTGTTCAGAGACTCATGGCAGTGGTCAGATCAGAGTAACTCCTCATTCAGATACTGGAATTCTGGTCAACCTAATAATTTGGGAGGTAATCAAAACTGTGCAATACTCTATCCGAACACACAGGAAAAATGGCATGACTACTATTGCAACTACCAATATCCTTTTGTGTGTCATGAAGATAAACTGATCCTGATCAAAGAGAATCTGACGTGGCCTGAAGCTCTGAGATACTGCAGACAGAATCATATGGATTTGGTCTCGGTTCATTCAGAAGAGATGCAGCGTCGTGTGATGAATGTGGTTAAACAGGCGTCTACTGAGGCGGTGTGGTTGGGTTTACACAACTGCTGCAGCCTGAACATGTGGATCTGGGTCAGCGGAGACATCGTGTACTATCAGAACTGGGCTCCATGGAACGGAACGACACCGGAAGACTGCCGCCTCGAGAAGAGAAAAGGAGCAGTTCAGTCTGGAGGAGATCAGCGCTGGATCAGCCTTCCTGAAACTCGCAAACTCAACTTCATCTGCAGCAGAAATGATGAGTGAATGTTTGTGTGTTTACTTACATTCACTGTTTTCATACTTCATTATTTCTCTTATTTACTTGTATTTGTTTTAGTAAGTTCTGAGTGAATCTGCTAACTGCTAAATTTGAATCATCATGGCATAATGTAATCTTTTTAAAATGTTTTAACATTAATGTTTCATATTCATTCCCCCGGTTTCACAGACAAGGCTTAAGCTAGTCCTTGACTAAAATGCATGTTTGAGCTGTTTAACTGAAAGCAACTTGTACTGGCATATCTCAAAATATGTCAGTGTCATCGTTTTGACTCAAGATGAACACCAGTAATGTTGTTTCTAGTGAATGTTTATAAAAGCTACTTAAATGCCCTAAATAAACTAAGGTCTAATCCTGGCTTAGGCTAGGTCCTGTCTGTGAAACCAGGCCTTAAGATGTTAAGTGTGTTTTATAAATCTCTTTGTATATCTGGTGTGGTTACATCTCTTTATGTTTTCACTAACAATAACTGGTTGAATGTGAATCTGTGAGCAGCAGCTCTTCAGAATAATATTGTTTGTGTCTCAGAATGAAATCTGGTTTATTCTTAGAAAAGCTGAAGTGAAGGTTGGGTATAAAATATCTTGTGTTTGATCAAAACCATCAGATAAACATGTGAAACAGAACATCAGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581001 lncRNA upstream 38389 254550 ~ 254601 (+) True G506714
TU580977 lncRNA upstream 68899 227019 ~ 230363 (+) True G506699
TU580967 lncRNA upstream 80568 218204 ~ 218694 (+) False G506694
TU581043 lncRNA downstream 68349 373916 ~ 374298 (+) True G506752
TU581051 lncRNA downstream 86144 391711 ~ 391925 (+) True G506760
TU581067 lncRNA downstream 169558 475125 ~ 562627 (+) True G506775
TU581133 lncRNA downstream 264709 570276 ~ 570843 (+) True G506807
TU581129 lncRNA downstream 265595 571162 ~ 571997 (+) False G506804
CI01000350_00277505_00278977.mRNA mRNA upstream 19510 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00266537_00276376.mRNA mRNA upstream 22471 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00260761_00261744.mRNA mRNA upstream 37453 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00249103_00250406.mRNA mRNA upstream 48634 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00146107_00147209.mRNA mRNA upstream 151987 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00324715_00343520.mRNA mRNA downstream 19148 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00361432_00364007.mRNA mRNA downstream 55865 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00457534_00503845.mRNA mRNA downstream 151490 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00586494_00587461.mRNA mRNA downstream 280927 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00825304_00827619.mRNA mRNA downstream 519737 825304 ~ 827675 (+) True CI01000350_00825304_00827619
TU581079 other downstream 193529 499096 ~ 500756 (+) True G506786
TU581251 other downstream 459743 765310 ~ 766111 (+) True G506911
TU581186 other downstream 672524 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1148996 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1149319 1455782 ~ 1455902 (+) False G507676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065384 False 1198 mRNA 0.45 5 NC_007118.7 4657987 ~ 4660270 (+)