RNA id: CI01000350_00825304_00827619.mRNA



Basic Information


Item Value
RNA id CI01000350_00825304_00827619.mRNA
length 695
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000350_00825304_00827619
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 825304 ~ 827675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCGGAAAGCTGTGAGAGATCGGTTGTGAGTGTGAAGAAAGTTCTTCTCATCACTGCTGCTGAGCCCATTAACACTGTCTATGAGGACAGAGACTTCATCCAGAAGATCAAGAGGAACGGCGAGGAAATAGACGTGGAAGAAGAGACAGAGGAGGCTGTGAAATATGAGAGAATAGTGGCACAGTATCTGGAGGGTCAAGGTTCCTCACTGATCATTTGTCCAGTGTCATCCAGCCCGGATTTGCTTATGATTCAGAGTCCCGATGCAGACCCGAGCCTCACCTCTTCCACAGACGCTCAGAGTCTGATTGTGTTTGAGGATGTCCGCACCACTGAGCCAACTGGTTCTCCTCAGGAAACAAGTCCCCTTCAGAGCTTAAGCCTGGTTTCGTCCACACATGTGGAGGATGAGGAGAGCGGGACAGATGTGAACCTGTTCTCAGTGAAGTTAGGAGGAGTTTCGGCAGAACCGCACAAAGCTGAACCTGATCAAATCCTCAGTATTAAAGTTGAGCTGGGATCATATCCTCAGAGCCTGTTACAGACTGACTCCCAGTCACAAACCTCCATTGGGAAGTACATTCCAGAGGGAGATGAGGAAGATGAGGAATGTTCAGACTACTTGAGTCGAAATTAGATTCCTGGAAAAATTAACTAAATCCTTGGCATTATTTCAGAGTAAATGTGAGAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU581261 lncRNA upstream 51419 773356 ~ 773885 (+) True G506920
TU581240 lncRNA upstream 67090 749818 ~ 758214 (+) False G506906
TU581239 lncRNA upstream 70410 753323 ~ 754894 (+) False G506906
TU581236 lncRNA upstream 70410 753781 ~ 754894 (+) False G506906
TU581238 lncRNA upstream 70410 753781 ~ 754894 (+) True G506906
TU581284 lncRNA downstream 37499 865174 ~ 869870 (+) True G506943
TU581307 lncRNA downstream 52669 880344 ~ 881175 (+) False G506964
TU581308 lncRNA downstream 52669 880344 ~ 881175 (+) True G506964
TU581343 lncRNA downstream 129003 956678 ~ 956910 (+) True G506996
TU581139 lncRNA downstream 176855 1004530 ~ 1004858 (+) True G506813
CI01000350_00586494_00587461.mRNA mRNA upstream 237621 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00457534_00503845.mRNA mRNA upstream 321339 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00361432_00364007.mRNA mRNA upstream 461226 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 481026 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 519737 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00856394_00860868.mRNA mRNA downstream 28719 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 59442 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_01039300_01048692.mRNA mRNA downstream 210478 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_01068561_01071605.mRNA mRNA downstream 240736 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01100195_01101995.mRNA mRNA downstream 272520 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
TU581251 other upstream 59193 765310 ~ 766111 (+) True G506911
TU581079 other upstream 324548 499096 ~ 500756 (+) True G506786
TU581186 other downstream 150416 978091 ~ 978891 (+) True G506858
TU582195 other downstream 626888 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 627211 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 627211 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 627211 1455782 ~ 1456034 (+) True G507676

Expression Profile