RNA id: CI01000350_00887155_00896486.mRNA



Basic Information


Item Value
RNA id CI01000350_00887155_00896486.mRNA
length 2245
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000350_00887155_00896486
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 887117 ~ 898009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATAATCATACCTTGTGTCATCATACCACGACACCATGACAGTTCTTGCAGTGTTCAATGCAGCGGGAACATTTAGTCGCACAATGGTCATTTTTAAAGGCAAGCAACTAAGGTGTGAGTGGCTTTATGGCTGGCCAGAAAATGTTGTAGTTAGGGTCTCTGACAATGGCTGGATAAACCGTGACCTGTTTCTGGAGTGGGGTCAGATGTTTACAGAGCTGCTGCCAAAAGATGACCTAAGGCCCCATGTTCTCCTGTTGGATGGCCACAGTAAAAATCAAAAAGGGAATAGAGCACAAAGCAATACCCCTGGACAGCCTGCCAGAGAGTGTATGGCTGACATACTGCTAAACAATCTCAGAGCTAAAATAATTGATGCGGTGGAGACTTGGGGACTTACTGGAAAAGTGTCTGCATATGTTCACGATAACGCACGCAACATCATGGCAGCAGACTTTCCCGGATGGATGAAATGGGAAACAGTTGCCCATTTTGTGCATACACTGCAGCTGGTTAATGATGGTTTTAATGCATTTGTGCATCGGGTTATCATTGCAGCTGAGCTGCTTGTCAAGCACTTCAACCACAGCACCCCTGCATGCAAGGCACTGGAGGCAAAACAAGAACAAATGAAACTTCCGAAATACCAGCTCATTCAATCGTGTAAAACAATATGGAACTCAGTGTGTGACCTGTTCAGAAGACTTCTTAAAATGTGAAAACCTTAAAATGTGCGACCACCATCATGTCACTGCACACCTGACCTATGTTTACACTCACCCTCCCACCTATCCTCTTTGGTTTCATCCTCACAAATTCCCCCTAATCAGCTCTTGTCCCTTGATACTAAAAGAGATACTGACTCTTTGCTTCACTCTAAAATCTTGTTAAGACAACTTTTGCCCCGTCTCATCCAAGCTAGCCCCTACTGTCCGCTGGCTATCTGATGTTATCTGCGAGCATAGCTCTAAACACAGGGCGATAGAGAGGAAGTGGCGCAAATCGAAAAAGTTCCCACTGACCTTAGTTTGTATCAGTCACTCCTCTATTCCTTCTCTGCAAATGTCTCCACTACTAAAACAACATACTACCACAACAAAATTAACAATTCTGACTCTCACATGCTTTTCAAAACTTTTTCCTATCACCAGTCTGGGCTTCAAAACCGGACATTCAACCGAGACTGCCCTGCTCTCTGTTATTGAGAGCTCCAAGACTGTCAAGAGCAGCTTTCAAATCATCAGTACTCATCTTGCTGGAACTGTCTGCTGTTTTTGACAGAGTTAACCACCAGATCCTCCTGTCAACCCTCATGACAATGGGCATCTCAGGAACTGCACTCCAGTGATTCAAGTCTTATCTCTGAGGTATCTTGGAGGGGTGAGCTGTCTAAGTCACATCATCGAGCTACTGTGGTGCTTCAGGGCTCAGTGCTTGGACCACTTCTCTTCTCCATCTACATGACATCACTAGGATCTGTCATTCAGAAACATGACTTTTCCTATCAATGCAATGCTGATGACAAAAACTCTACCTCTCATTCCAACCAGATGATCTGACAGTAGCTGCTTGTATCTCAGCCTGCCTGACAGACATTTATTGCTGGAAGAAGGACCATCACCTTCAACTGAACCTTGCAGTTTCAGCCATCCCAACACTTCATAACTTCTCCATTCAGCTAGGATCATCAACCATAACTAATTCCAGATCAGCCAGGAAGCTTGGAGTTGTGATTGATAATCAGCTAAATTTCATACATTTCATTGCTAGAACTGACCGGTCCTGCAGATTTGCCTTTTTACAATCGAAGCATGCTACACAACTCCTTGTCCAAGCCTTGTTCTATCCAGGCTGAACTATTGTAATGCTCTCTTGGCAGGAATTCCAGTGTGGTGAACAGCACATTCCCGGGCCCAGTTTATGGTCGGGCCCCTCTCTGGCCATAACAGTGGACAAAGGTTTGCTACATTTTGATTGGATCTTGGTGGACTAACACAAACAAACTGTCCAAAGCCATGAGAAAAAGATGCTAGGATAACAGCCAGACACTTCTTAGATGGCAAGAAGACCACCTCAGGTTTTGCCTGTGACTGCCATTAAAATATATATATATATATATATATATATATTTCCATCTCGGGAACTCTTTTGATCAGAAATACCAGAGCAGCTTTACTCGCGGATATGAAATATGAAAATATGCTTGACTGTCTTTTTGGAGATATTAACTTATTTTACTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU581307 lncRNA upstream 5942 880344 ~ 881175 (+) False G506964
TU581308 lncRNA upstream 5942 880344 ~ 881175 (+) True G506964
TU581284 lncRNA upstream 17247 865174 ~ 869870 (+) True G506943
TU581261 lncRNA upstream 113232 773356 ~ 773885 (+) True G506920
TU581240 lncRNA upstream 128903 749818 ~ 758214 (+) False G506906
TU581343 lncRNA downstream 58669 956678 ~ 956910 (+) True G506996
TU581139 lncRNA downstream 106521 1004530 ~ 1004858 (+) True G506813
TU581105 lncRNA downstream 117963 1015972 ~ 1017022 (+) True G506800
TU581372 lncRNA downstream 164924 1062933 ~ 1063328 (+) True G507024
TU581419 lncRNA downstream 289142 1187151 ~ 1217232 (+) False G507059
CI01000350_00856394_00860868.mRNA mRNA upstream 26041 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00825304_00827619.mRNA mRNA upstream 59442 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00586494_00587461.mRNA mRNA upstream 299434 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00457534_00503845.mRNA mRNA upstream 383152 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00361432_00364007.mRNA mRNA upstream 523039 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_01039300_01048692.mRNA mRNA downstream 140144 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_01068561_01071605.mRNA mRNA downstream 170402 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01100195_01101995.mRNA mRNA downstream 202186 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01110658_01123802.mRNA mRNA downstream 212649 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01136425_01169812.mRNA mRNA downstream 238416 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
TU581251 other upstream 121006 765310 ~ 766111 (+) True G506911
TU581079 other upstream 386361 499096 ~ 500756 (+) True G506786
TU581186 other downstream 80082 978091 ~ 978891 (+) True G506858
TU582195 other downstream 556554 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 556877 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 556877 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 556877 1455782 ~ 1456034 (+) True G507676

Expression Profile