RNA id: CI01000350_01039300_01048692.mRNA



Basic Information


Item Value
RNA id CI01000350_01039300_01048692.mRNA
length 2494
RNA type mRNA
GC content 0.40
exon number 11
gene id CI01000350_01039300_01048692
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1038153 ~ 1048845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATAAACATGTTTTTATTCAATGATATTTCATGCCTGCTGAGTTTCACAAATGCTACCATACAACAATTGCATTGACTCTGACTAAATTGCATCGAAAAATAAAGCAGCTGATAAAAATGACAAATTGAAATAAGAGACTTGTGCAAAAATATATTTGGTGCTGCTAAACATATTTAATTCATTTCAAACAGCCTTGTTATCCACTGCTTCTATATTTTACATATAGCTACTATACAAAAAATATGCATTTACATTTTAACATAGTGATGCTTGTCAATAAATCAAATACACAAACTAGAGATTCAAACATCCATTTAATAAATCATATGGGGTGATGTGTGCGTTCGTCAGACCTCTCAATCCTCTCTCAAACATTGGCGTGTTTGAAGTGTGTAGTCATTTCCTTCAAACAACACTGGTAGTGACACACTTCGCTTTGAACCTTCTGTGATTATAAGTTTAAGATGATCTGTGGCTAAATGCTTGCTAAATATATCCATTATGAAGAGAAATGCAGTTACAGTGTTTACCATCCATTGCTTTCTTGGATTGGCTTGGTCTGAAATAAAGTTTCAAAAACTTTTAATCCACTGGATTTTTAAGACAATATTAGAGTATTGATATTAGAGTATTAATATTAAATAGTAGTTCATTCGGTGAGTTGTTAAGGTGTTTTCTCAATCATCATTTTTTAATGAAATTTCACAAGTTTACCTGCCCATCCAGTCTTGACAAACTTATTTGGCTTGCTCAGTCCCAAGACTTGGCTCAAGCTCTGAGCTAATCAAACCCCCAGACTATGGGATTGGACAGAATGAGGTTGCTTAGAATAGAGGAGAAGATGGAGTGTTGGAGGGAAGCTGGAAAAGCCATCGCTGGCGCAGCTTAATGACTGCTGCTTATATGAGTGACAGGACTGAATGATTAGGCTCCTCCCAAACCTACGTTTAGAATGTCTTTTATTAGAGTAAAAAGTATTATAGAGTATTATAGTTTGCTTTGGAATGTAGAAAAGTAAAAGTTTTAAATATCTGAAAAATGTACAATTCAAAACATACAATCCAAAGATAACATCAGTTAATGTGTCATGGTTGTTTAGGTGCTGAATTCTGCTGACTGTCTGCGGTTGAGGAGGCTGTATTTATGGCTCAATATGACCAACTCGAGGATAAAGATTCGCTGGATATTCATGATAATCCTCCAGCGCCAGACAATGTCGTAAAGGAGGATGACAACACTGTACGTATGTCAGCTTGTCTCTGTGTCTGTATTGTGTGCACACAACTCACTTTCTGTCCTCCTCAGGTGTATTTTGTCTATGATGAAGAGGTGGAGGAAGAAGAGGCTCCTCCTCCTCCAACCCCTGAGCCAGTAGTCCAGGTCAATGACAGACCACACAAATTTAAGGACCACTACTGCAAGAAACCCAAGTTCTGTGACGTCTGCGCACGAATGATTGTTCTCAATAATAAATTTGCCTTGCGCTGCAAAAACTGCAAGACCAACATTCATCACTCGTGCCAGTCATATGTGCAGTTCCAGAGATGCTTTGGAAAAATACCTCCTGGTTTTAGACGGGCGTACAGTTCTCCACTCTATGATCAAGAGATCAATAACCCTGGTCAGCAGAACCGCACTGATCCGGTGTTTGACACACTGAGAGTGGGTGTGATCATGGCCAATAAAGAGAGGAAGAAAGGGTCAGAGGACAAAAAGAACATGATGATGATGATGATGGAGGAAGAGGAAGCTCAACAACCAAAAGAGGATGAAGAGGGTGGTGAAGTAAATAATTGGGACTCTTCAGGATCAATGGTACTTACCACAAAAAGCCATCTCTGCAGCTACTGGCAGATCTTTCCAATTCTTCAACCTTACAATTCTGCATCCCATTTCTCTGCGGCCTGCTCATTTAGAGCAGTCAATACCTTCACTATAAAGTTCTTTACACATTCAAACAAGAAGCAGCAGCAGACGTTCAGTCAGTCTCACTATTATATGGCTCTGTATCGCTTCAAAGCCATTGAAAAAGATGACCTGGACTTCCATCCAGGAGATCGCATCACAGTGCTGGATGACTCTAATGAGGAGTGGTGGAGGGGTAAGATTGGTGAGAAGACAGGCTACTTGCCCATGAATTACATCATCAGGGTGCGAGCAGGCGAGAGGGTATATAAAGTGACACGCTCCTTTGTGGGAAACAGAGAGATGGGCCAGATTACCCTGAAGAAAGATCAGATTGTGGTGAAGAAAGGAGAAGAGGTGAATGGATATCTGAAAGTAAGCACTGGACGTAAACTGGGCTTCTTCCCTGCTGACCTACTTCAGGAGATCTGAATGACGGAGATTCATTCAGAAAATAAGTGAAGTACAAAAATGGACAGAGAAAGATGACAATGTCTGACCTCACTGGCACTGTGAAAGAAATACGAACACATGTGGGCATGTACACAGTTTCTAAATTTAACTTTCACCAAGCACTGTATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU581105 lncRNA upstream 21131 1015972 ~ 1017022 (+) True G506800
TU581139 lncRNA upstream 33295 1004530 ~ 1004858 (+) True G506813
TU581343 lncRNA upstream 81243 956678 ~ 956910 (+) True G506996
TU581307 lncRNA upstream 156978 880344 ~ 881175 (+) False G506964
TU581308 lncRNA upstream 156978 880344 ~ 881175 (+) True G506964
TU581372 lncRNA downstream 14088 1062933 ~ 1063328 (+) True G507024
TU581419 lncRNA downstream 138306 1187151 ~ 1217232 (+) False G507059
TU581421 lncRNA downstream 138306 1187151 ~ 1215039 (+) True G507059
TU581449 lncRNA downstream 141259 1190104 ~ 1253441 (+) True G507078
TU581500 lncRNA downstream 257453 1306298 ~ 1313026 (+) True G507123
CI01000350_00887155_00896486.mRNA mRNA upstream 140144 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_00856394_00860868.mRNA mRNA upstream 177077 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00825304_00827619.mRNA mRNA upstream 210478 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00586494_00587461.mRNA mRNA upstream 450470 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00457534_00503845.mRNA mRNA upstream 534188 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_01068561_01071605.mRNA mRNA downstream 19566 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01100195_01101995.mRNA mRNA downstream 51350 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01110658_01123802.mRNA mRNA downstream 61813 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01136425_01169812.mRNA mRNA downstream 87580 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
CI01000350_01268618_01269611.mRNA mRNA downstream 219680 1268525 ~ 1269786 (+) True CI01000350_01268618_01269611
TU581186 other upstream 59262 978091 ~ 978891 (+) True G506858
TU581251 other upstream 272042 765310 ~ 766111 (+) True G506911
TU581079 other upstream 537397 499096 ~ 500756 (+) True G506786
TU582195 other downstream 405718 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 406041 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 406041 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 406041 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 410981 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile