RNA id: CI01000350_01271412_01272029.mRNA



Basic Information


Item Value
RNA id CI01000350_01271412_01272029.mRNA
length 1880
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000350_01271412_01272029
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1271412 ~ 1273291 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCTGAGAAGTGGGGAGTGAAACAAACCTTTGAAAATGAAAGAATTAGAAGGGCAAAGCGCCATTTCGATGAATTCTGTCAGGACGAGCGTCTGGCTGATGCTGAAAGTTACTTTAAGGTAAATGTATTTAACGCTTGCCTAGACATCATCATTTCCCAGCTGAGTCAGCAATTTTCAGCTTTGCGATCAGTTGCTGATTTGTTCAGAGTGGTCCAGCCGCACATACTTGCAACTGAGGAGAAGAACGCTATATACAAGGGGGCACAGAGGTTAGTGGAGAGATACAACCAAGACTTGTCTCCAGCCGTTCCACAACAATTGATCGCATTCCATGCAGCCTTTAAAAGACAAATCTCTGGGATGACTATAGTTCAAGATCTGGCCAGTTTTTTGATTGTTGAGAACAACCCTATTATATCTAGCTTCAGTGACATGTGCACCGTTTTAGTTCTCTTTCTTACTATCTCTGTTACTGTTGCTTCAGCGGAGCGCTCTTTTTCAAAACTGAAGCTCATCAAAAATTATTTGCGGAGCACCATGTCGCAGAACAGACTATCAGGACTGGCTATTCTTTCACGAAGCCGTGAATTAAACACCAGGGACATCATGAATTAATTTGCTACAGTGAACGTCTATAAATGTCCCTTCAGTGGAGGGCGGGGTTAGGGGGCCCGTACAAATTTTTTTGCATATGGGCCCGGGACTGACTTGCTACGCCACTGTGCCAGGATGATTGTTTTGTACATTGTAATGGATTATAAAGCAACAAGCTGGATGTACGCACCCTCAACCTGACGAGTCAGTTTAAATACATGTATATATTGCCACGATTGGTCAAATAATTAGCCATTTTCATTCGTCATTACTGCAAATAGGTAATTCTGATACATGCAATGATTATCCACTTTGACATGTAGGCATTTTTATCTTTATGCACACAATAATAATCTTTTACGTTGCTTTTCTTTTTAATATGTGTCATGTTTGTGTGCTGCTGCGTGTCCCTGTGTGTGTAACGCACCCTTTAAATAATAATAAAATACTGCGGCATTGACTTTAGAGCAGGTTTCAGTTGGTCAATGGCGCAGTCATTTTCAGTTGCCTCAAAATAGCAACACACCAACAATGTGCCTGAACACACCTCGTTTTCAGACCAGCACACCCATGGGTGAACAGACGGGCACGAGTGCATTTGTTATTTAAACAACGTGGCGCTGGACGTGAAAATGATAACTGTGTCGGGCTGAAACTAGAAAAAAACACTTGCGGTGCGCCTGGCGTCGCATTGTGCTGGGTGTATGATAGGGCCTCAAATTTTGTATGTATCATCTTAGAAGATATAAGTTTAATAAGTATATGGAGCCATGGCTACAAAATGAATGGGCTTATATCTTCTAAACGGTTTGACTAATTAAAATTATTTTGATAACTTTTTGTCATAAGTGTTTATAGATGATACATGCAAAATGCAGTCAAGTGGTTTAGGAGTTAGAAAAAGAAAATTTTGCCAACTCAAAATGGTCAGCGGACTACAACATGTTGTAATACTGTTGTCCACCAGAGGGAACCACAGGATAAGACAGTTTCTATCAGTTGGTATGTATGAATCCAAATCTCACAGAACAAGACATTCTGAGGAAACATGCAGAGTTTCATGAACTTCTGATGCTCTGAGCGCTAACAGCAATTTTTAAATATTAGCCCTTTATTATATCAATGGGATTCCAAGATGAAGGCCATAATACTAATATTGTCCACCAGAGGGAGGCACAGGATAACAAATACTTTTAGATCTCATAGTTTAAAGTCCGTGTAAATGGTTCAATAGATTGACTTGACTAAATGCATATAAATTCATTTTAGATTCATAAAGTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU581449 lncRNA upstream 17971 1190104 ~ 1253441 (+) True G507078
TU581419 lncRNA upstream 54180 1187151 ~ 1217232 (+) False G507059
TU581421 lncRNA upstream 56373 1187151 ~ 1215039 (+) True G507059
TU581372 lncRNA upstream 208084 1062933 ~ 1063328 (+) True G507024
TU581105 lncRNA upstream 254390 1015972 ~ 1017022 (+) True G506800
TU581500 lncRNA downstream 33007 1306298 ~ 1313026 (+) True G507123
TU581502 lncRNA downstream 34043 1307334 ~ 1307891 (+) True G507125
TU581522 lncRNA downstream 80129 1353420 ~ 1353878 (+) True G507144
TU582173 lncRNA downstream 126994 1400285 ~ 1400530 (+) True G507656
TU582190 lncRNA downstream 154751 1428042 ~ 1428260 (+) True G507672
CI01000350_01268618_01269611.mRNA mRNA upstream 1626 1268525 ~ 1269786 (+) True CI01000350_01268618_01269611
CI01000350_01136425_01169812.mRNA mRNA upstream 101600 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
CI01000350_01110658_01123802.mRNA mRNA upstream 147187 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01100195_01101995.mRNA mRNA upstream 168974 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01068561_01071605.mRNA mRNA upstream 199633 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01289098_01292899.mRNA mRNA downstream 15807 1289098 ~ 1293079 (+) True CI01000350_01289098_01292899
CI01000350_01315313_01317803.mRNA mRNA downstream 41978 1315269 ~ 1318223 (+) True CI01000350_01315313_01317803
CI01000350_01343443_01355860.mRNA mRNA downstream 69811 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
CI01000350_01357162_01358608.mRNA mRNA downstream 83069 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01374131_01407038.mRNA mRNA downstream 100506 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
TU581186 other upstream 292521 978091 ~ 978891 (+) True G506858
TU581251 other upstream 505301 765310 ~ 766111 (+) True G506911
TU581079 other upstream 770656 499096 ~ 500756 (+) True G506786
TU582195 other downstream 181272 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 181595 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 181595 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 181595 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 186535 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile