RNA id: CI01000350_01315313_01317803.mRNA



Basic Information


Item Value
RNA id CI01000350_01315313_01317803.mRNA
length 1976
RNA type mRNA
GC content 0.41
exon number 10
gene id CI01000350_01315313_01317803
representative True

Chromosome Information


Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1315269 ~ 1318223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATATAGCTACCCATGTCATCAACATCTGCTGATATTGGAGATGGATGAGGCAACATTTACTACTCTTTTTGAATTCAAAAAATCTGGAAAGCTACCTCATGGTCTTTCCAGGAATGAAAAAATTGTGTTTCTCAGAAAAGCCAAAAACTTCATAATTGAAAATGAAGTTTTGCATTACATAAAGAAAAAAGCAGGAGCTCTGTCAAAAGTCATTCAAAGCAAAGAGAAGGCCAAAGACATATTTAGGGAATTCCACAGTAGCTCAATAGGTGCCCACTGTGGGGTTCATAAAACTCTTGATGCCATAAGCAAGAGGTTTTACTGGCCAGGCATGTCTGTGGATATTAAAAAATGGGCAACACACTGTGAAGTTTGCCAGAGGAAAAATAGTTCTCTTAAGACTCAAACTGATTACACCCCTATTGTGGTGGCAGAGCCATGGGAGGTAGTGGGAATGGATTTAGTGGGAAAACTTGCACCAACAAAAGATGGCTACCAATACATATGTGTTATGGTAGACTATTTTACAAAGTGGTGTGAGGCTTTCCCACTAAAATCCAAAAAGGCGGAGGAGGTAACAAATTGCATTGTCCGGCTCTTTTATAAATTTGGTGCTCCTAAAAGGATTTTAACGGACCAAGACACTGAATTTGTCAACAAGATAAATCTGGGCGTGTGTGAAATGCTTGGCATCAAGCGGAGTTTATGTGCTCCATACCATCCCCAAACAAATGGATTGGTGGAGAAACTTAATGGAACAATTCAAAGAACATTGAGCAAGCTTGTTGAGAAAAGACCAAATACATGGTCTGATTATTTGGATGCAGCAATGTTTGGTCTACGAACCAAAAAACAATTGACCACAAATTTCTCCCCATACTTTTTACTTTTTGGTCGTGAGGCTAGGTATCCATGTGAGGTACCACACGCATATGAGATCAATGAAAGCGTAGAAGACATGATTGCCTTAGAATCACTCATCAACCGGCGGGACAAGATTTACAAAATTGTTCAGGACAACATGACATGGGTTCAAACTAAAATAAAAAAAAGAAAACTACAACAAGGAAAGCCCAGTGTCATGCAGGTTGGGGACAGGGTAATCAGACAAAACATCAGGAGCCAGCAGAGAAAGGGTGGAAAACTAGATCCAGATTGGGTAGGCCCATTTACTGTAACAAAGGTAGATGGGAAAAGCATTGACCTTCTAGATGACAACGGAAAAACAATTCCCAGGACTACCTTCACAGTAACCCAAAGACACTACACTTGTCATCAAGCGCCTACTGCCATACCTGCCTCCCAACATACAGTCTCCAAGCCTGCTGCTTCCCACACTGCTGCGTCCAGTGCTGCCTCTAAGCCTGCTGCCTCCCACACTGCTGCCTCCCAGACTACTTTGTTACAAGACATCTGGGCAAGCAAAGTAGGAGGAAGGCTCTGTAGCAAAATAGGTCCCTATAAATTGTTTACCTTTGATCTTGAGCGCCTCAGGCCTGGGCAGATGCTTGAGAGTGAGGTTATCAATGCATACCTCACTTGCCTGGTATAACAGTTATGCAGGGAAGGCATTTGTCATGGATTCGTTTGAAATTACAAACATATGGGATGGCAAGGGCAGTTCAGTGACGAGGGTAAAAGACCATGCTCATCCTGAAGAAAAAACAAAAGTTTGTGTTCTTGAGATTGTGTTGTTCTAATTACCTATAACTGTATAATATAGATGGATCCACGGGCATATGATCTTCTGCTGGGGGCCGTAAATGAGGGCAAAAACCACTGGACACTGCTGGTTTGTTTCATTACATGACTTATGCCTTTCTCTATTAGTAGGTTGTTTGTTTGTTTTTCAGTTTAATAACTTAATCTTTTGGCAGATGATATATCCTCAAAAAGGGAGGATAGTTTATTTAAACTCGTTTGGTGAGAGCAGCAGGAATGTTGTTCACGGCAGAAAGGCTGTAAGGTGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU581500 lncRNA upstream 2243 1306298 ~ 1313026 (+) True G507123
TU581502 lncRNA upstream 7378 1307334 ~ 1307891 (+) True G507125
TU581449 lncRNA upstream 61828 1190104 ~ 1253441 (+) True G507078
TU581419 lncRNA upstream 98037 1187151 ~ 1217232 (+) False G507059
TU581421 lncRNA upstream 100230 1187151 ~ 1215039 (+) True G507059
TU581522 lncRNA downstream 35197 1353420 ~ 1353878 (+) True G507144
TU582173 lncRNA downstream 82062 1400285 ~ 1400530 (+) True G507656
TU582190 lncRNA downstream 109819 1428042 ~ 1428260 (+) True G507672
TU582191 lncRNA downstream 110462 1428685 ~ 1429025 (+) True G507673
TU582204 lncRNA downstream 139852 1458862 ~ 1458971 (+) True G507683
CI01000350_01289098_01292899.mRNA mRNA upstream 22190 1289098 ~ 1293079 (+) True CI01000350_01289098_01292899
CI01000350_01271412_01272029.mRNA mRNA upstream 41978 1271412 ~ 1273291 (+) True CI01000350_01271412_01272029
CI01000350_01268618_01269611.mRNA mRNA upstream 45483 1268525 ~ 1269786 (+) True CI01000350_01268618_01269611
CI01000350_01136425_01169812.mRNA mRNA upstream 145457 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
CI01000350_01110658_01123802.mRNA mRNA upstream 191044 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01343443_01355860.mRNA mRNA downstream 24879 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
CI01000350_01357162_01358608.mRNA mRNA downstream 38137 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01374131_01407038.mRNA mRNA downstream 55574 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01454880_01462490.mRNA mRNA downstream 136657 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_01583582_01585575.mRNA mRNA downstream 265260 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
TU581186 other upstream 336378 978091 ~ 978891 (+) True G506858
TU581251 other upstream 549158 765310 ~ 766111 (+) True G506911
TU581079 other upstream 814513 499096 ~ 500756 (+) True G506786
TU582195 other downstream 136340 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 136663 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 136663 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 136663 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 141603 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile