RNA id: TCONS_00020673


Basic Information

Item Value
RNA id TCONS_00020673
length 2528
RNA type mRNA
GC content 0.36
exon number 4
gene id XLOC_010543
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14383479 ~ 14397003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCATCACAAGCTATAACTTTTGGAAGAACTGACTGAAAGCCTGAGACCGGAGGAAAAGGCACAGTTTGACATCTCCACTTTCCTTTGTCAACGGTAAAAGAAAAAGAGCTGTAGAAGGTTTGAGGAAGGAGGAAAATCACGTTGGCTTTATCAGTGGGAATTTATCACTGCTTTTTAGAATCAGAGTGGCTGGTACTTTTAGAGAGTGTCAGGTTCAAAGACTGTGACTCATCGGAGAAAAGTGATAGGTTACTTTCAGAGGAACGACAGAACGGAAGATGGATCGTAAAATTCCCGATTTTGCTGGTACCTGGAAAATGAAGAGCTCTGAGAACTTCGAAGAGCTTCTTAAAGCACTAGGTGTGAACGTGATGCTCCGTAAGATTGCGGTTGCAGCTGCATCAAAACCATCCGTGGAGATTACACAGGAGGGAGAGACACTGACAATCAAGACGTCCACCTCAGTGAGGACCACCAACGTCACCTTCACAGTTGGACAGGAGTTTAATGAGGCCACTGTGGATGGACGTCCCTGCACGAGCTTTCCTCGCTGGGTAACAGACAGCAAGATTAGCTGCGAACAGACTTTGCAGAAGGGCGAGGGTCCAAAAACCTCATGGACCAGGGAAATAACCAATGATGCTGAATTGATTCTGACCATGACTGCTGACGATGTGGTGTGTACAAGAGTTTATGTCAGAGAGTGAACATATAAGGAAAAAGGAAGAATATCCATCCAGATTGGAGTCTTTCCTCATTAATCACAATGACTGTGACTTGTTTCCTTTCTTCCTAATCTCAACTATCACACTTTTTTTATTGACAATGTATTTGAATAGTACGTCAGAGAGCCATGCAAATATAGTTCCAGAGATTCAAgcaattttgtttttttctgattggtcaatttaAAACTACATAATCTTGGGTTCAAAAGCACTTTTAAAGATTGATCTAAAAATAGATGTAGACCTGGAAATCTGAAGCTTGGAAACCAGTTCACAAGGTACAGTCACATTTAGCattgttttgtcattttcatgggcaaaatagttttttttaagagCCATCTATACAGTTATTCATGCTGACCATTAGAAACCCAGcgagcacacaacatcataagacgttaatattaggctaCATTCAGatcatgacatcaggtgaccaaaatgcaatgtctaaCCAGCATCTAttgacaacgttattttgatgtctaataatgatgtcaaattacatttatatttggttgattttaggttgtgttggaaagtgaccaaaatccaacgtctgatggaTGTCATGGtgttaacgtccacacaacgtcaaggtgcaacatgattagatgttgatttttggttggacattgatgtcggcctgacgttgggttctgatgtcaacccgattttttttccaaacataaTCCAACATCCCCGTGACATTGGGGtacattggggtacaatgtcaatatgacatcctgttgacgtcttgtgcctgcagAGAAGGTGCTTAGGAATAAAGTGACTTCTGCATCATTCAATGTTACACAAATTACATTAGACAATGGACTTTTTTGTCCTGAAATGTCCCTCCCTAATATGGCCACACCATTAGAATCTTCCCAAAACATAGCagtttagtttgttattttttcctaattttatCCTATGCAAAGATCCACCTTAAAAATGTTACATCCACTGTCCCCATCCATTTCTCAGACAGACCTTTTTATTATATAACTGTATGGAGtgtctgtttttatattttgaaggACCATTCACGCTAAGGATGATAACTGTAATGATAATGGTATACTTCCAAAtattagaaatataaaacaattacagAAACCTAATCACAATGAATgatattgctttattttttcaaatCAGATTCCATTTTGCTATAACAAGCTCAAGCATTTAAAGTGTCAGACAAAAAACTTGcctaacttgtttttaataaacaaaatgctaTCATTCATTTTTGTAAACTTTAATATAGATATCATCATAGTTATAATTCTAGGTGTGAATGTGCCTTTTGTTTATCGTGCCCGAAATGtatgttcatttcatttcattgtgAGAATTTGTTTGACAAAGATTATATTCATTAGAACATTAtgtaacagtttattttatgAAAAATGACAGATAAAATGCATTTCGACTTAAGTTCATTCCATCTATGTAATATCCaatcaatattttaacattttttaagtaGACCCAGTCATGCCATTAATGAAAATGTCCGATTCATTCCTATGTGAACTTTTTGTCTGAATTAAATACAGCACAAAAAGAGATGGAGTTAAGAAAAAGGGTCATATGTGATTAGAATCCCCTTAGAATCTCAGAAAACAACTGTCTTCCATCTTtacttttttgtatatattttaataaaacatgaatCTGAAAGTTTCATccaaacagtttttttattatgtttttatataaacagTTCCAGCAGTCATCACTTATTTCTGTGCATGGACAATAAAAGTTTCTGCCCTGAAAA

Function

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001972 retinoic acid binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020320-4 Predicted to enable retinoic acid binding activity. Acts upstream of or within hindbrain morphogenesis and regulation of retinoic acid receptor signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; immature eye; neural keel; neural rod; and pleuroperitoneal region. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2).

Ensembl:

ensembl_id ENSDART00000170957

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020668 lncRNA downstream 215806 14093781 ~ 14167673 (-) True XLOC_010540
TCONS_00022133 lncRNA downstream 292777 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00022132 lncRNA downstream 377870 13976380 ~ 14005609 (-) True XLOC_010536
TCONS_00020659 lncRNA downstream 522915 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00020675 lncRNA upstream 19343 14416346 ~ 14417407 (-) True XLOC_010544
TCONS_00020676 lncRNA upstream 24797 14421800 ~ 14428968 (-) False XLOC_010545
TCONS_00021789 lncRNA upstream 25151 14422154 ~ 14424198 (-) False XLOC_010545
TCONS_00020677 lncRNA upstream 29446 14426449 ~ 14428968 (-) False XLOC_010545
TCONS_00021790 lncRNA upstream 29857 14426860 ~ 14433656 (-) False XLOC_010545
TCONS_00020672 mRNA downstream 29912 14280496 ~ 14353567 (-) True XLOC_010542
TCONS_00020671 mRNA downstream 50918 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020670 mRNA downstream 50918 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020669 mRNA downstream 134587 14231406 ~ 14248892 (-) True XLOC_010541
TCONS_00020667 mRNA downstream 308885 14064397 ~ 14074594 (-) True XLOC_010538
TCONS_00020681 mRNA upstream 131371 14528374 ~ 14534724 (-) False XLOC_010546
TCONS_00020682 mRNA upstream 131553 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020683 mRNA upstream 175005 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020684 mRNA upstream 655510 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020685 mRNA upstream 767980 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020665 other downstream 424594 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 565539 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 712260 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 841019 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1889062 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020689 other upstream 1416503 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2176411 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2280705 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 2723061 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 2724995 17121998 ~ 17129466 (-) False XLOC_010577

Expression Profile

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