RNA id: TU582205


Basic Information

Item Value
RNA id TU582205
length 335
RNA type TUCP
GC content 0.58
exon number 3
gene id CI01000350_01454880_01462490
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1454563 ~ 1462490 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAGCCTGCTGCCTCCTCCACCTTGGCCGCTGCCTCATCCACCCAGGCTGTTGCCTCAACCCTGACTGCTGCCTCCTCCACGCCAGGTGCCTCAGCATCTTCCGACGAGTCTGTGGCTTTGGATAGCTCTGGTTTGCCAGGCATGGACAGAGTCGACAGCCTTGCAGAGTATCTTGTGGAGCTTAGGAACCAGCCCTCTCTGGCCCTCACCAACCAGCAGATGAGCAATATTGTTGCTCTTTGGCAGAACCTGCTGGACTATGACAAGCAGAGGGTGGTGTTTGCTGCCAGATACCAGAGCAAGCTGGACACAGGGAGGTTCAGGTCCCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582204 lncRNA upstream 2148 1458862 ~ 1458971 (+) True G507683
TU582191 lncRNA upstream 32094 1428685 ~ 1429025 (+) True G507673
TU582190 lncRNA upstream 32859 1428042 ~ 1428260 (+) True G507672
TU582173 lncRNA upstream 60589 1400285 ~ 1400530 (+) True G507656
TU581522 lncRNA upstream 104904 1353420 ~ 1353878 (+) True G507144
TU582222 lncRNA downstream 33173 1495410 ~ 1558319 (+) True G507700
TU582220 lncRNA downstream 102429 1564666 ~ 1565610 (+) True G507698
TU582219 lncRNA downstream 112669 1574906 ~ 1595941 (+) True G507697
TU582370 lncRNA downstream 186492 1648729 ~ 1648957 (+) True G507843
TU582374 lncRNA downstream 200454 1662691 ~ 1662996 (+) True G507847
CI01000350_01374131_01407038.mRNA mRNA upstream 54081 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01357162_01358608.mRNA mRNA upstream 102473 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01343443_01355860.mRNA mRNA upstream 105234 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
CI01000350_01315313_01317803.mRNA mRNA upstream 142896 1315269 ~ 1318223 (+) True CI01000350_01315313_01317803
CI01000350_01289098_01292899.mRNA mRNA upstream 168040 1289098 ~ 1293079 (+) True CI01000350_01289098_01292899
CI01000350_01583582_01585575.mRNA mRNA downstream 121246 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
CI01000350_01625265_01628425.mRNA mRNA downstream 162906 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01748423_01750654.mRNA mRNA downstream 286186 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01860321_01869386.mRNA mRNA downstream 397662 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_02051537_02098878.mRNA mRNA downstream 589300 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
TU582197 other upstream 5085 1455782 ~ 1456034 (+) True G507676
TU582195 other upstream 5217 1455782 ~ 1455902 (+) False G507676
TU582194 other upstream 5217 1455782 ~ 1455902 (+) False G507676
TU582196 other upstream 5217 1455782 ~ 1455902 (+) False G507676
TU581186 other upstream 482228 978091 ~ 978891 (+) True G506858
TU582221 other downstream 53472 1515709 ~ 1519828 (+) True G507699
TU582500 other downstream 925386 2390180 ~ 2390292 (+) True G507957

Expression Profile