RNA id: TU580930


Basic Information

Item Value
RNA id TU580930
length 386
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G506679
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 150274 ~ 150659 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTGTAACCTTGGGCAGATCTGTGCCTTGCCACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGGTCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACACAGCTGGACTCGAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACAGCACCTGAGTTAAATATATGAGTGTCACAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA upstream 24551 125482 ~ 125723 (+) True G506678
TU580905 lncRNA downstream 11980 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 27131 177790 ~ 180852 (+) False G506680
TU580938 lncRNA downstream 27307 177966 ~ 180613 (+) False G506680
TU580941 lncRNA downstream 27307 177966 ~ 181043 (+) False G506680
TU580936 lncRNA downstream 27365 178024 ~ 180613 (+) False G506680
CI01000350_00146107_00147209.mRNA mRNA upstream 2999 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 6470 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 10310 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 29591 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 47700 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 98444 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 109970 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 114613 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 126514 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 148603 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 348437 499096 ~ 500756 (+) True G506786
TU581251 other downstream 614651 765310 ~ 766111 (+) True G506911
TU581186 other downstream 827432 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1303904 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1304227 1455782 ~ 1455902 (+) False G507676

Expression Profile