RNA id: TU580905


Basic Information

Item Value
RNA id TU580905
length 2411
lncRNA type intronic
GC content 0.33
exon number 3
gene id G506655
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 162639 ~ 166302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCGGATGACTGTAAGAGCTCCACCGACTGCGGGTAACAGCTGAGATAACAGATACTGTCCGAGCGCCATCAAAACAACCTCATGCTCGTAACCACACATTTTATCGTCATTGGCGTAGTATCAGCGGTGGTTTTGATTGTTATCATCATCGCCCTCACCTGCTGCTGCTTTAAGTAAAAATGGAAATAGTGTATCAGATCTCCAGTAAGACTGCACCTTATTGGATGCAGATTATACCGTGGATGTGTTTTAGTCATAGTTATTAAAGCCATTTTTAAAATTCTTGAATATGTCTCATTTTCAATTTGTCCTTTCAGTTTGGTTTTTGTTCAGTGACAGTTTTACTTTATTTAGTGTATTCTTTCAGTTTTGTTGATGTTTTTTCCATTATATTTAGTTCGTGTTTTAGAGCTGCCAAAGTTAACAGTGTTAAATGTAAATCTAGTGGCATGTTTAATGCAGGTGGATTGATTGTAAATGTTCCAAATTGTACGGATTAATATACTGTGTATCAAAGACTACAATTAACTCATGGTCAGCTTTATTTTTGTTAGTTTTGTTGGTTAATGTGGTTGAGTTTCAGCTTTTTTCCAATTTTCATAGTTTTCACTAACAGTGAAATGTTCACAGATATTTTAAATGTCTTGGACTTCTACACAAAACCTGCAAACAGCCATAGTTCTGTTTAAAGGAAGTGTGAACAAGTTTTCTGTTGAGTTTATTCTTTTTAAGGTCTAAAATGCAACTGGAACTGAATGTGAGAAAGATTTCCCACAGTTCTGTCACGAGTGTTCAACACTGGATCCCCGACTGCTGAAATAAAAGAGAAATGATCTCCAGCGCTTCTATTGTTGATATTCATCTAATAGTAATAGAGTATTTTAGATATTTCACTCTTTCTGCATTTGAATATTTTTAAATGCAGTGTAAACTTTTTGCCCTTAATTTAAAAAAAAATAAATAAAAAATAGAGAGACAGATTATTTTTACTGTTTTGAATATGATGTTGAGTATATATTGTGAAAATGATCCCACAGTACATTTTCTAGAAATCCTATTTTTGATATACCTTGGAACTAAATGACCATATTTATTTACTACGGTAATGACAGGTTAGTCCAAAACACTAGACATGGACTACATCAACACTGCATTCAAGAGTATGAACTAGGGTAAACGTACCTATTAAGCTCACCAAAATCTACATTGAGACATTTTTAGTGCACAGGATATTGGTTTCAGTACAAGATGTTAAAATAAAATAAAATATTAATCTCTCACACAATAATAATTAATTTTATTTTAAATGACAAAAGCATTTCAATTAAGATGTACATCATTAAATGCAAAAAGTCTGTCTGTGTTTAATGGGTACATTTTTGTACCCTTTAAGCACACCGCTGTTGCCATTAAGCTCACAACATGTTTTATTAAAAATTCTTGTTTAGTTTAAACAACCTTTTTAAAGAATTGAAAAATGTTTCATTTGAAGGTACAGAGTCAATCGCAAAAAAAAATAAAAACAGAACACTAAAATCAAGCAACAAGGCATTCAATTTGATCAGTTATATATTCTAATTCGTGACCGGTGTTTTGCTTTGCTCTCTCCTCTGCGCTTCCGCGTTCGTCATTACGTCATGCGTCAAGTCAAGAGTTCACTCTTTGCTGTAAATCGATGTGTACGGCCGTCTGTCGGAAGCTAGTTATTTTAGTTTGTAAAGTTTTTAATATGGATATTTTTTTCTAACACAAATGCATCGCTTTGCTTAAGAAGGCCTTTATTAACGCCCGGAGCCGTGTGGATATTGTTTATGATGGATGCACTTTTCTAGGATTCAAAATCTCATCCTCTATTTACTGTCATTATAAAGCTTGGAAGAGCCAGGACATTATTTAATACCAAAAATGTTAATATAACTCCGACTGTACTAGTCTGAGGACACACCTAAGATAGCTTGATGGTCAGTAAATCATGGGGTAATTTTTATTTTTGGGTGAACTAACCCTTTAAGGCTGTGAAAAGAAGTTATTAATCATTTTATAAAGATTAACTTAAAGTGACAACCATCAGTTAATATTTAAAGTCTGTTTATGAAGTATTTACATAGATGTTTAATGTGGATGATCTTAAAGGGAGCACACTGAGCTTAACTGGAGCAGCAACAATTTTTAATTAATAAATATTACATTAAATTTAAAGGACAAGATTTTGTTAAATAAATAATCTAGGTCATGTATTAAGTTTATACATATTTTAATATCAACAACTATTATTGACAATATCTATGAAATTATACTTTTTCTTACTGATGTCACACTGAAGCTGTGTGATTTTCACAGTAGTGCACCCTTTAAGCTCGCCTAACAATAATATGAAGTCTTTAAAAATTGCAGCAGTGTAAAACCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580930 lncRNA upstream 11980 150274 ~ 150659 (+) True G506679
TU580929 lncRNA upstream 12002 150274 ~ 150637 (+) False G506679
TU580928 lncRNA upstream 36916 125482 ~ 125723 (+) True G506678
TU580944 lncRNA downstream 11488 177790 ~ 180852 (+) False G506680
TU580938 lncRNA downstream 11664 177966 ~ 180613 (+) False G506680
TU580941 lncRNA downstream 11664 177966 ~ 181043 (+) False G506680
TU580936 lncRNA downstream 11722 178024 ~ 180613 (+) False G506680
TU580937 lncRNA downstream 11722 178024 ~ 180852 (+) True G506680
CI01000350_00146107_00147209.mRNA mRNA upstream 15364 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 18835 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 22675 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 41956 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 60065 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 82801 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 94327 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 98970 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 110871 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 132960 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 332794 499096 ~ 500756 (+) True G506786
TU581251 other downstream 599008 765310 ~ 766111 (+) True G506911
TU581186 other downstream 811789 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1288261 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1288584 1455782 ~ 1455902 (+) False G507676

Expression Profile