RNA id: TU580938


Basic Information

Item Value
RNA id TU580938
length 1238
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G506680
representative False

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 177790 ~ 181043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGAAGCTGAGACTACATCTCAACCAGTGTACAAACCCACTTTCCTGGAATCACCAAACCAGAAGCGCCTGCTATCAGCGCTGCATCGGTAGATCTTTATAAACGCGTTTCATTTGTCCAGTTCTTTCAGGTTTAGCGTAAGAGCTCCACTGACTGCGTTTACTGGCACTGTCCGAGCACCATCAGAACAACATTATGGTTGAACTGGATCCTATCATCATTGGCACAGTCATAGGAGGGGTTTTGATCATTGTTGTCACTCTTGCCATCACCTTCTGCTGTGTCTTTAAAAATAAATCACTTCCAGTTCCTCCGATACCTCTAGTGTAACCGCTGCCTTTCATACAGCAGTAGACCACGCCTTATTGGATGCAGAATGAAATTAATGAATTACTTATTTTTGTATATCTTATTTTATAGATTGTGATCTGTTTGATTATAATGCTCTGTACAGCACTTTGGTCAACCTTGGGCTGTTTGTAAATGTGCTTATAAAAATAACCAATGAATGAATGAATGATTATACAAGACCAGCGGATGTGTTTTAGTCCATTATATTGTCTGTTTTATTTTCAGTTTGTCCTTACAGTTTGGTTTTTGTTCAGTGACAGTACTTTATTTAGTGTTTTAATTTTCAGTTTTGTTTATGTTTTTTCCATTATATTTAATGGAATCCATTATAAATATTTTATACATATATATATTTGATATACCTTGGAACTAAATGAATATATTTATTTACTACGGTATTGATAGGTTAGTCCAAAACACTAGACATGGACTACTTTAACCTTGCATTCAAGAGTATGAACTAGATGTTATGTTTACTGTGAAAGAAACTAGTCCAGTTTGTGACATAAATAATTTCTTTTACCCCTATTAGCCTCTGTGCTCCCACATTATTAAAGTATTACCAATGTAAAACTCACTGAAATTTTCTGGATATGAAGTTGAAGTTTTTTCCTACTCAAGTGTAAGGGAACCTCCTTAAAGTTAAATGATAATTTTTGTTAATTCAATACCTTTTCAAAAGTCATTCATATAATGACTGACGATATCAATCCTGTGCGTGGTTTTTACAGTCGAAAAGCACTGAGCTTGAGTTGAGATGCAGATCAAATTAACTTGTAACAACCTATTTTTATTGGGAAAAATGTTCGTATTCTACTCTTATTAAATGTACCTTTGATCTTCAATAGTTTCATACAGAACTGACCGACAGCTTCAGTGGTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580905 lncRNA upstream 11664 162639 ~ 166302 (+) True G506655
TU580930 lncRNA upstream 27307 150274 ~ 150659 (+) True G506679
TU580929 lncRNA upstream 27329 150274 ~ 150637 (+) False G506679
TU580928 lncRNA upstream 52243 125482 ~ 125723 (+) True G506678
TU580951 lncRNA downstream 3040 183653 ~ 183956 (+) True G506686
TU580953 lncRNA downstream 6395 187008 ~ 187218 (+) True G506688
TU580954 lncRNA downstream 8993 189606 ~ 189885 (+) True G506689
TU580955 lncRNA downstream 16112 196725 ~ 205705 (+) True G506690
TU580967 lncRNA downstream 37591 218204 ~ 218694 (+) False G506694
CI01000350_00146107_00147209.mRNA mRNA upstream 30691 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 34162 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 38002 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 57283 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 75392 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 68490 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 80016 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 84659 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 96560 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 118649 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 318483 499096 ~ 500756 (+) True G506786
TU581251 other downstream 584697 765310 ~ 766111 (+) True G506911
TU581186 other downstream 797478 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1273950 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1274273 1455782 ~ 1455902 (+) False G507676

Expression Profile