Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU580937 |
| length | 1419 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 3 |
| gene id | G506680 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000350 |
| NCBI id | null |
| chromosome length | 2572209 |
| location | 177790 ~ 181043 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU580905 | lncRNA | upstream | 11722 | 162639 ~ 166302 (+) | True | G506655 |
| TU580930 | lncRNA | upstream | 27365 | 150274 ~ 150659 (+) | True | G506679 |
| TU580929 | lncRNA | upstream | 27387 | 150274 ~ 150637 (+) | False | G506679 |
| TU580928 | lncRNA | upstream | 52301 | 125482 ~ 125723 (+) | True | G506678 |
| TU580951 | lncRNA | downstream | 2801 | 183653 ~ 183956 (+) | True | G506686 |
| TU580953 | lncRNA | downstream | 6156 | 187008 ~ 187218 (+) | True | G506688 |
| TU580954 | lncRNA | downstream | 8754 | 189606 ~ 189885 (+) | True | G506689 |
| TU580955 | lncRNA | downstream | 15873 | 196725 ~ 205705 (+) | True | G506690 |
| TU580967 | lncRNA | downstream | 37352 | 218204 ~ 218694 (+) | False | G506694 |
| CI01000350_00146107_00147209.mRNA | mRNA | upstream | 30749 | 145916 ~ 147275 (+) | True | CI01000350_00146107_00147209 |
| CI01000350_00140280_00143769.mRNA | mRNA | upstream | 34220 | 140153 ~ 143804 (+) | True | CI01000350_00140280_00143769 |
| CI01000350_00133984_00139525.mRNA | mRNA | upstream | 38060 | 133984 ~ 139964 (+) | True | CI01000350_00133984_00139525 |
| CI01000350_00110973_00120683.mRNA | mRNA | upstream | 57341 | 108898 ~ 120683 (+) | True | CI01000350_00110973_00120683 |
| CI01000350_00095230_00102190.mRNA | mRNA | upstream | 75450 | 95230 ~ 102574 (+) | True | CI01000350_00095230_00102190 |
| CI01000350_00249103_00250406.mRNA | mRNA | downstream | 68251 | 249103 ~ 250628 (+) | True | CI01000350_00249103_00250406 |
| CI01000350_00260761_00261744.mRNA | mRNA | downstream | 79777 | 260629 ~ 261809 (+) | False | CI01000350_00260761_00261744 |
| CI01000350_00266537_00276376.mRNA | mRNA | downstream | 84420 | 265272 ~ 276791 (+) | True | CI01000350_00266537_00276376 |
| CI01000350_00277505_00278977.mRNA | mRNA | downstream | 96321 | 277173 ~ 279752 (+) | True | CI01000350_00277505_00278977 |
| CI01000350_00299478_00304914.mRNA | mRNA | downstream | 118410 | 299262 ~ 305567 (+) | True | CI01000350_00299478_00304914 |
| TU581079 | other | downstream | 318244 | 499096 ~ 500756 (+) | True | G506786 |
| TU581251 | other | downstream | 584458 | 765310 ~ 766111 (+) | True | G506911 |
| TU581186 | other | downstream | 797239 | 978091 ~ 978891 (+) | True | G506858 |
| TU582195 | other | downstream | 1273711 | 1455782 ~ 1455902 (+) | False | G507676 |
| TU582194 | other | downstream | 1274034 | 1455782 ~ 1455902 (+) | False | G507676 |
