RNA id: TU580954


Basic Information

Item Value
RNA id TU580954
length 280
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G506689
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 189606 ~ 189885 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAGGCAGAAGGACACAGGATTTCCAACAAAAAAAAGTTTTATTTTATCCAAAAAAATTAAGAAAAAATAAGAATACAAAAATAAATCAACTTAACCTAACAAATAACCTAGCTAGATTAAGATAACTGAGGTCAACAGAACAAAACTCAACTCTTAACTCAAAATAAAGAGTAACTAAAGAGAACTGAACAAAACTGACCCCCTAACTAAGACAAAACCCAGGTATTTAAGACAAACGGTGAGCTCACTTAAACAAGACAGGGGAAAACATACAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580953 lncRNA upstream 2388 187008 ~ 187218 (+) True G506688
TU580951 lncRNA upstream 5650 183653 ~ 183956 (+) True G506686
TU580941 lncRNA upstream 8563 177966 ~ 181043 (+) False G506680
TU580937 lncRNA upstream 8754 178024 ~ 180852 (+) True G506680
TU580938 lncRNA upstream 8993 177966 ~ 180613 (+) False G506680
TU580955 lncRNA downstream 6840 196725 ~ 205705 (+) True G506690
TU580967 lncRNA downstream 28319 218204 ~ 218694 (+) False G506694
TU580964 lncRNA downstream 28453 218338 ~ 218661 (+) False G506694
TU580965 lncRNA downstream 28453 218338 ~ 218694 (+) True G506694
TU580977 lncRNA downstream 37134 227019 ~ 230363 (+) True G506699
CI01000350_00146107_00147209.mRNA mRNA upstream 42331 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 45802 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 49642 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 68923 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 87032 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 59218 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 70744 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 75387 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 87288 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 109377 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 309211 499096 ~ 500756 (+) True G506786
TU581251 other downstream 575425 765310 ~ 766111 (+) True G506911
TU581186 other downstream 788206 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1264678 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1265001 1455782 ~ 1455902 (+) False G507676

Expression Profile