RNA id: TU580955


Basic Information

Item Value
RNA id TU580955
length 8952
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G506690
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 196725 ~ 205705 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAGAAGCATCTAACCAGAAGTGTAAAGACCTATATACATATATTCAAAATATAAAACATTACTGTTGAAAGCTGCAGTCAGATTCATTCAGATAAGTGCATGTAAACAGTGATTATGGCTCATGGATCACTCCTTGCTGACACTAAACCAGACAGCTTTGGGTTACCAGAGCTTTAACCACTACTACAACTCTCGGATTTGTTTTCCACAGCCTTAAGTCGACACCTTATGGTATACCCGTGATTGTGTATTAGTGAAGTCAAGCATATTTACATGTATAAATGAACACCATGCTCCAAATATGCCCATATGGTGAATCTTTTATTTGAGTTTTTCTGTTGAACGTTGATTGCATGCTCTTTTCACGTGCCTGTTGTCTGCATCGCTGTGACATCATCACATACACCCCAATATGAGTTAAAACAAAACACTTTGTTGACGAGACTTCCCCTGAGCTGAAGAGAGCGATAAAGTGAATAATAAAAAAGGTAATGATGGCAAACAATTATTGGCTTATTTTGAAAAAGTTTAGATCCACAGAGCTTATGGAAGCATCTGAAAATATTGGTATTGCTGGACAGCTCCCTGTAGGAAGACAGCAAACTCTGCCCGTCATAGTGTGAAGACCTAAATCTGGGCTGCGCCTCAAACAGAAGGCTGTGTCCTCCTGAGGCTTCTACTGTAGGCTAGACTCCTTCTCAGCAGTGAATGCTAGAATGAGATGGTTTAGTAATGGTTTGTTTTGTTTTGCATTATATAATGAAATTGAACAAGCTCAGTGCTGACTGGCTTTCTGCCAATTCTTGTAGAATATACTATGCATTCTTCAAAATATGCTGAATGAGGGACGCAAAACATAGGCTGCCTTCCAAGGGCCCTCCAAATTGAGACGGCCTTCGATGGTGCTTGATGACGTGCAGCCCAGATATGCAGCCTTACTAGGGCGCAGCTTTCCAAATTGAGAAGGACTCAATATTCAGTACTCAGCAGTATTGAAAAGATGAAGCTTCTCTGCCTGTTTTGGCATCTTCACCATCAAATACTGCCAAGCGATTGCTGAATTGTTGAATTTTAAAGATCCATTTGGTTAGTTTTGTACTGGCAAGGCAAGTTTATTTTTATAATACATTTCATATACAGTGGTGTTTTATCTCAAACATAGTCTGAACACATGATGTGGGAGTCAAAATTGGTCAAGATTGTACACCTTTTTTGGAGAAGAAAAAGCAGCTACAATTTGGCTAAACTTCAGCTAAAATCCAAGATGGTGAACGTTGCAATATGGCTAATAGTGAAGGTGCACTAAATTTGGCTTTGCCCAATCGTAAAATGGGAAACCAGGCAAAACTGATATCAGCAGAAAATGCAGTGGCACTGGAGACGTTGAGGGGCAAATCCTAAATTTGTTGTCATTTGGAGACCATGCCACGGCTATACCATTTCACAACCCTTTAGCCTGTGGTTATTTGGGCTGCCATAGATTCCCATGAACAAACAAGTTTTTCGGCATTACACATCTTTGGTACTTGATGCCTATCATAATGATTTTATTTCTTACTTCATTGTATTTCATACTGATATTTACATACAGAGACAAATATGTGCAAATAAAAACAATAAAAAAGACGATAAAAGAGAACTTTGTAAACAAAGAAAGACAAACAGTATGTTACACAGCAAGTGCACAGGAAAGCAAAGACTGTACGAGCAGGTCTATGAAGAGAGCGGGGCAGGATGAAGAAGACGATTTACTCCTTCAGAGAGAAAATGTTCAGGTGGGGCAGAGCCCATTCGATGGACCACTGCTGAAATATATAATGACATATTAAACAAACAAAAGAAACCAGATTTGCAAATGCTAACAAATTGATATGTGATTCAACATAGATTGTGCTTTTGTTGAAAGCAGTTGTAATATTTGTACTATAATTTATATGAACATTATTAAAACCAAGACAGAATGTTGCTGGATCATGCTGTTAATCCCAGCCCCCGATTATTTCACTGAACTGCAGAGGATGACTTCTAAGTATATTTGTGAAGACAGAAAACATTGTATGAAGTTGGAAAGCCAAAAACATCCCAATTGAACTGTGCCTCCATTTGCTTCCAGGTTGGAGCTACACTCTGCAGGAACGTGGCCCTTTGACATCTCTGCCAAGCTTACTATTTGTTGTTATTTAAAAAAAAATACTATATTACAGTAACATGTGTACTTTTATCTGTTGCTGTTGTCTGCCTATAGTTTATAATCACCCTCTTTATGAAACATTAGTCAACAACTCCTCAGTAAACAGTAAATCAGTGCTTGTGTGTTCTTTAAAAAAACTGACTATTTCATCTCATATTTGTATGTTTTTTTGTTTTGTTTTTTGAGGAGAGATAAAATAGGGTCACCAACTGCTTCTTTTTTTCCACCATGTACAAGGAACTCAAAAACTCAAAATCCAGGTAAATACTTGAACTCACCCAACTCTCTTTGAGCTGGAAAGTGTTTTCCTGGGTCCTTCTGCAGTCGAATCTCCTTCACGGAGAAGATGGAGGTAGCTGCGGTGACAGAAATGAAAAACCGTTTATAATAACGCTAACATTTCCGCTGTGAATGCATGACTTCATAAATGTGTAAAATTGCTCCCTACAAACTCCTACAGTCCGTACGAACTCCTTTATTTGCTTACAAGCAGAAACTGCCATCTTGACTTATGATGTTCACAAATTTTTTGATGAATGAGATGTTAGGGTTACAAACATATATTTGTGAAACTACTGAAAATGAACTTTAAAATAAGCTTATACCACTTTGATATTACTGGAATGAAATACTTACTGTCATCCAGGTCCTGCACTTTGTCTCCCAGTTCTCTGAAATAAATGTGCCGAAGAGCCGCTTCTGCAGAAATACGCTGACTTGCTTCAAACTACAAAAACACATACATCTAGCGTGAATATCTTTCTTTTCTATGCACGTTTACAAATTGAATCTCAATGCAAATACTGCAGTTTTGTTGTGTTGTACTAACAAGTTATGCGTTATGATTCATAAGCAGTGTTGAGTGTGAGTAACTACAAAGCTAACTGCAGAAATGTCACAGGCGTCTTTTCTAATGATCCTGGGCTACTAACAAATGACGCTAGTATTCGTGATATTACTCAGTAGTCAGGAAACAACTGTAGTTCAAGTTCAGTTCTCTACAGTCTGTCTGGGGGAAAAAATCTGTAAAATTTTGTGGTTATTTACATTCACAAAGATTTTTTATTGACAATTTTTACAAAATATCTTTTTGACTATGAAAATGAAAATTCACCCTATTTATTTTCTATATTAATATTATATATAACATTATAAATCAGATCAGTGTCTTTAACTACTATGTACTAACCAGGGCCGTTCTTAGGGCGGTGCAACCGGTGCGACTGTAACGGGCACCTCATTTATGTTTTAGACCTGACGGGATGGTTTTCACCTGATATTGTGCACATATGTCACTCGCCCGTGTGTGTCTCGTCATATCTGTAAATAGGGAAGGGTTGCTCTGGCTGCTTTGACGCGTGTCTGGTGTGGGAGCGACACAGGTTAGTTGTCACAATGAGCGAAAAAGGTCGACGTGGAGCAGCTAAATCTCCAACCTGTTTTAAACAAACACCGAACAAAGGAGAGTCTGCTGGCAGTGACAGAGCTCGTAATAAAACCAGAATCAACGCTGGCTTGGCTTTTCAGAGATGGTGAGAACTGAGGGATTTGAAAAGTTGTAAAAGCGACATGGAGATGATGGTGTTTTTATTAATCAACAGGTTTATTGAACAGATAAACTGCCCTATGTATCTCTCTAACAGAGTTCACTGTGAAGCATTATCTATTGTGAAAATCATTTTATTATGGTTGTAGTAACGCTGTGCTGGAATTTATTTTCATGGAAGTACTGTGTCTATTGAGTACTGTGTCTATTATGTGAGATCCTTTTCATCTAAACTGGTTATATCTCTTAAGCCTAATAGTGAATGTTTTATGAGCAGTAGGATAATCTCTCTCTCTCTTTTTAGTAATGAAGAAGAGCCATATTCATTCGCACAGTCACACAGAGCCGATGCACATCCAAAACAATGTTCTTCTGCAAAATGCATGCAGTTTTGTTTTTTAACTGCTAGTGTACCTTTATGAATTAAACACATTGAATCATATTTAATTCTTAAAGGTACATCTGTAAAAGCATCTTTCATAATAATGAACATATTAATCCGGTCAAGTAAAAAGTAGACAACGATCAAAAACCTTTTGACGTCTGAGGCTTTCTTTGCTTTGGCAAAAGCGAATTCGTACTTTACCTGTAAAAACTGGCATAGCAGATCATGACCGTCATTGGTGATCCTGTAGAACAAAATTACACAAAACATATTATAGCTGTAGCTTTTCAGTTCCAATGTTAAGAAATTTTAGTGGTGGTATTTTACGGGCACTGGCGTAATCTGCTGTTTTTATTCCTGTTCTTGTACCTTTGCTTTTCAATTTGGACTAGTTTGTCTCTCTTGTTTAACGGGTTTCTGTGTGTGAAACATTACCAATTAAATAGTCTCTTCTGCACATGGATCCTAACTCTTCCTCAGTTTCACCCTTTCAAGGTGGTACTAGGACCTTTTCCCTACAAAAAGTGTTATCTAACAATACAGCTCATATAAAGATCCACAAATATATAATATCACAGCAGAAGCCACACAGAAAGGCTATTCACACACCTGGGTGCATGAGTGATCAGAGGTTCTCCGTCATAGTGAGGGAAGTTGTATGACAGGAAGTTGTCATTGGTATTGACCCCTGGCCAAGAGTCCTCAGTAGGAGAACCTGGAGATGACATGAGATTATAATCAAAACAGACTCCAACTAGTCACTAGTAGTAGTTAGACATCTAAATAAAACTGGTAAAGTTGCTCAGATGCGTAAACCCACAAAATACACAGTGCCTGTCAAAGGTAAACCTAGTCTTTTATTGTTTTTGAGAGAAACAGGCATGTTCCTTTTGTTTATATGCAACAAACTAGGTGATTTTAATAGTATGAAGGTTTCATTTGACCATACATGTGCAGATGTTGGTAGGTTAAATGCCCTACAGACCGTGATTGAATGACTGAATTCAGGTGGTGATGGTTGAGCATTGATGCAGGTTACAGGTTAGTGTATAAGGCATTTACACATCTTGTCTAGTGTTTGTAGTTTCCAAAATATCAAGAAAGAACCAAATCTCTATTGAAAAACACCAGTCTGTAGTTGCCTTGAGAAATAAAGGCTATTCTTTTTTACTACTGTCTGCAGAGAAAAAGCAGTACTGGGTCTAACAAGGACAGAAAAAGGAGTGGAAGGCCAGAATGTACCACTCCACAAGAGGACAAGAGCATCAGGGTTCAGCCTTTGCAACAGACACTTGACTAGTCCTCAGCTTACAGCACAGCTCAATGACACTCGTGATGTATCAGTGTCATCAACCACTGGCACCAGATGCAGGGCTGATGGGCAGAATTTCCTGCAAGAAACCACTCCTGAAGGATTCAGATAAAGCAAAGCAACTAAAGTGGGTGAAAACACACAAGAATTGAACGGTGAATGACTAGAAGAAAGTTCTGTGGACAAATGAGACCAAAATTGACATTTTTTGGCTCAAGCAGAAGAACTTATGTCAGACGGAGAAGAGGGGAGAAGAGGTTACCAGACATGGAGGTGGAAGTGTAATGGTTTGGGGATGTTTTGGAGCAGGGAAGATTGGAGACTTATTCCAGGTGAAAGGAATACTGAACCAACATGACTACCATTCCATACTTCAACGCCACGCAATTTCATCTGGACTGCAGCTAATTGGAACCAACCTCACCATGCAACAAGACAATGACCCAAAGCATACGTCCAAGATCTGTAAGTGTTGTTTAGAGAGCAAACAGTCGGCTGGAGTGTTATCCAACATGGAATGGCCTGCCTAGTCACTTGAATCCTATTGAACTGCTCCGGGATGAACTGGATCACAAAGTCAGAAAGAAGAACACCTTAGCCAAGTTTTACTAGAGGCATGGCAAAGCCACGGCTTGGGATTGTGTTCTTTGGCCATGTGCTCTTGTATTGTCATGTTTGGTGTGATCACATGTCTTCTGTCATGTTTGTTTCTATGTGCCATATACTCCCCTGTCTTAATGTCTTGTCTCAACCCTTGTTATGTCATAATACAAATAACCCCAGGATTTTGGTGGAAAAGGGGATAGTGCTTATTCTCTTCTGACACACACAAAACACACAAATTCACAACCTGTAAAAGTGACTTTTGGGTCCCCACGTTGTTTAAGGGTTCTTTATTACGTATTTACATTATCAAATTAAGCATCTGTATTTGTTGTGTACATGCATGTTGTTCTGAAAATGTTGTTGCTATTAAGGTTACGTGTTGGATTGAGGTAGGGACTGGGTTTAAGTGCTGGAGTATTGTAAATAGTTTAATTACACTATTCAAAACCACTGGTACTAATGGGATGAATAAGCAAAAAAGCGTAATGAGTGCACCTTTACCATGCATAACACCACAGCTCTTACCCAAGATGCGAAATATAAGATGAAGTTCATCCTCCACTGTCGACCCAGGGAAGAGGGGGCGTCCGGTGATCATTTCATAGAATATACAACCTACACCCCTATGTTAATGAAACAAAGCAGACAGACGGACAGCATAAAACGTCTTTTTGAGAAATACATTAAAGGCAAAATCCCGATATGTTACACAGGCCAAATAGAGAGTCCAAAGCGATACCCATGAAAAACTCACACACACAATTTGGGGTTTTCTCATAGGTCAGGGCTCTGACAACCAAGTTACCGTCCCACAGAGTTCAGCTCCAACCCCAATCAAACACACCTGAACCAGCGAATCATGCTGTAACTGTCGTCATCCTAGATATGTAAAGATAAATTAGTCCAGACTAGGAGCGCTCCCTTTATAAAATTCCTGTTTATGAGTTCTCCTCCGCATTCGGCGAGCTCCTCTCCTCTTATCCGCATCACTTCTCATCCACGGCAACATACTTCCTGCATAATACTTGTAAAGTTGCTCTAATACATGTGTTCTTCTCTACTTTGAGCATAAATAAGTCATCTGTAGAATATGTACAATGGTCTCATCCTTATCTCTTTGACCTTGATTTTAACTCTGTACAGACGCTTCTGCACTTGAACACAAATAACTCTGAAATGATCTCCAGCCTAACACTCACAGCACTATAAGTGAATATGATACCACATCATACAAATGTTATATTCACTGTATTATAAATATCTATTTCAGCCATGAAGCTCTAGAGAAGTCATTTACATGCAATCACATCATTACCGCATGGCACAAGCTGACTGGCCTCTCCTGATCCTGCAGCCAATAAGATTTCTTGATCAACATTTAAATTGTCTGGGCTGCGTTTCCCACCAATTGTCTCTATGATCAACTTAGCTCATGATGCTTTTGAGAAACGCAGCCCTGGTTCAGTGTTTACTGTAAGCTAGTCCTGTAAGCGCTATCAGAGTTCCTCTGAACCCCTCCACCTCCCCAGCTCCACCTGCCTAGATCTGCTACGGGACTGATGTCTATTCATGCAGCAGCAGCAGCATATCTTACATGATCACAGCAGTGTGTTTGTGTGTCTATTAGCAGTGTCAAGTCCATACAATAAAGCATTATACTTAATATATTAGCTAAATACGTTAAACAATGAGGCAGGGAAATTGTATTCTTATTCATATTACACAACACACTGCATGTTGATTTTAGTTGACTGGCTTTTAATTTTCATTATGACACACTGGAAACCCACTATTATACAACAAACAGTATATTATTATAGTTGGTATAATCTTGAAAATAAAGTATAGATATATTTCCTACAAATTTTCACCATTCAACTAGCATTAATGACAGCAATCCAAACAGATGTGAAGTGTGTGTGTGTTTGTGTGTGACCTCACCAGATGTCGATGGAGGTGAAGTACTCTGTTGATCCCAGCAGCACATCTGGAGGTCTGTACCAGAGAGTGACGACTTCATTAGAGAAGGTCTTCGAGGGCACTGACTTTGCACGTGCAAGACCTACAGCAGACACAAACAAACCATTAATATGTAAACGTGATGATTCTCGTTCATTTCACACTGTACAGTTAATGTCAGTTGGTGTCTCTGTCTATTAACAGATAAGTATTTGGGAATGTGAGTGATTGGGCCTACCAAAGTCAGCAAGTTTGAGCTCTCCCCTGTCGCTGATCAGAAGGTTCTGAGGTTTTAGGTCTCTGTGCAAAACTTTGTGCCGATGGCAATAAGCTAGACCTCGCAATAGCTGAAACAGGAAAATCTATAGGGTGGAAACAAAGAGTACAATCATTTTCTTTTTCTTCCTTCCTTACTCTATTATCTCGCTCTGGCTTCGTTTTTGATGATCCTTTCTCTACATGGTGGCCACTCGTTCTCTCTTAGCCCTACATCTTCCTGATCTGCCCTTCAAACTGTCTCTTCTGTGCCCTGCTGGTCAGAGTTTGGTCCTGGGCTTGGCAAAACTTTTAGGTATGTAACTTACTTACACTCCAAAGCGTAACTTCTTATGTTTAGGAAAGAAGTTAAAGGTATAGTTCACTTAAAATGAAACTTCTGTCATTGTTTACTCAATCTCCTGTCATTCCAAACCTGTATGACTGTTTTCTTCTATGGATCACAAAAATAAATGGAGTTCAAACAACATTTGACCCCACTGACTTTAATATTTGCAAAAAGTTGTTTTTTGTTTGCTTTTTTTAAATGTCTTCTTTTGTGTTCCACAGAAGTACTACTGCTAGAATGAAAAACAACGGAGTGTGCATAAATTGTGCATTTCCCAGGCAATGACCTAACTTCCCAATGACAAGCTCATTTGTACATTAAAGGATTAGTCCACTTTCAAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580954 lncRNA upstream 6840 189606 ~ 189885 (+) True G506689
TU580953 lncRNA upstream 9507 187008 ~ 187218 (+) True G506688
TU580951 lncRNA upstream 12769 183653 ~ 183956 (+) True G506686
TU580941 lncRNA upstream 15682 177966 ~ 181043 (+) False G506680
TU580967 lncRNA downstream 12499 218204 ~ 218694 (+) False G506694
TU580964 lncRNA downstream 12633 218338 ~ 218661 (+) False G506694
TU580965 lncRNA downstream 12633 218338 ~ 218694 (+) True G506694
TU580977 lncRNA downstream 21314 227019 ~ 230363 (+) True G506699
TU580983 lncRNA downstream 36741 242446 ~ 349154 (+) True G506704
CI01000350_00146107_00147209.mRNA mRNA upstream 49450 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 52921 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 56761 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 76042 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 94151 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 43398 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 54924 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 59567 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 71468 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 93557 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 293391 499096 ~ 500756 (+) True G506786
TU581251 other downstream 559605 765310 ~ 766111 (+) True G506911
TU581186 other downstream 772386 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1248858 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1249181 1455782 ~ 1455902 (+) False G507676

Expression Profile