RNA id: TU580965


Basic Information

Item Value
RNA id TU580965
length 357
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G506694
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 218204 ~ 218694 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGCAAGAAGGCCTGGCTCACAGTCTCCGCTCTAATTCATCCCAGAGGTGTTCTATCGGGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGTCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGTCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580955 lncRNA upstream 12633 196725 ~ 205705 (+) True G506690
TU580954 lncRNA upstream 28453 189606 ~ 189885 (+) True G506689
TU580953 lncRNA upstream 31120 187008 ~ 187218 (+) True G506688
TU580951 lncRNA upstream 34382 183653 ~ 183956 (+) True G506686
TU580937 lncRNA upstream 37486 178024 ~ 180852 (+) True G506680
TU580977 lncRNA downstream 8325 227019 ~ 230363 (+) True G506699
TU580983 lncRNA downstream 23752 242446 ~ 349154 (+) True G506704
TU581001 lncRNA downstream 35856 254550 ~ 254601 (+) True G506714
TU581043 lncRNA downstream 155222 373916 ~ 374298 (+) True G506752
TU581051 lncRNA downstream 173017 391711 ~ 391925 (+) True G506760
CI01000350_00146107_00147209.mRNA mRNA upstream 71063 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00140280_00143769.mRNA mRNA upstream 74534 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00133984_00139525.mRNA mRNA upstream 78374 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00110973_00120683.mRNA mRNA upstream 97655 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00095230_00102190.mRNA mRNA upstream 115764 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00249103_00250406.mRNA mRNA downstream 30409 249103 ~ 250628 (+) True CI01000350_00249103_00250406
CI01000350_00260761_00261744.mRNA mRNA downstream 41935 260629 ~ 261809 (+) False CI01000350_00260761_00261744
CI01000350_00266537_00276376.mRNA mRNA downstream 46578 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00277505_00278977.mRNA mRNA downstream 58479 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00299478_00304914.mRNA mRNA downstream 80568 299262 ~ 305567 (+) True CI01000350_00299478_00304914
TU581079 other downstream 280402 499096 ~ 500756 (+) True G506786
TU581251 other downstream 546616 765310 ~ 766111 (+) True G506911
TU581186 other downstream 759397 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1235869 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1236192 1455782 ~ 1455902 (+) False G507676

Expression Profile