RNA id: TU581051


Basic Information

Item Value
RNA id TU581051
length 215
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G506760
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 391711 ~ 391925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGGGTAGCACCAGAGAAGCAAACAAATGTAAAGGGCTGACAGTTGGCAGAATGCGAATACAACAATGACATGAATATTCTAATTGCCGTATGACGTCATCTATCGACATTTACCGACATATATATATATGGCATTAAAAAAAAAAAAAAATATGGCATTAAAAAGCATTAAATTAGATTTGATGAAACCTGCAGAAACCCTGATATAAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581043 lncRNA upstream 17413 373916 ~ 374298 (+) True G506752
TU580983 lncRNA upstream 42557 242446 ~ 349154 (+) True G506704
TU581001 lncRNA upstream 130838 254550 ~ 254601 (+) True G506714
TU580977 lncRNA upstream 161348 227019 ~ 230363 (+) True G506699
TU580967 lncRNA upstream 173017 218204 ~ 218694 (+) False G506694
TU581067 lncRNA downstream 83200 475125 ~ 562627 (+) True G506775
TU581133 lncRNA downstream 178351 570276 ~ 570843 (+) True G506807
TU581129 lncRNA downstream 179237 571162 ~ 571997 (+) False G506804
TU581130 lncRNA downstream 179679 571604 ~ 571997 (+) True G506804
TU581131 lncRNA downstream 180227 572152 ~ 572617 (+) True G506805
CI01000350_00361432_00364007.mRNA mRNA upstream 27633 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 47433 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 86144 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00277505_00278977.mRNA mRNA upstream 111959 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00266537_00276376.mRNA mRNA upstream 114920 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00457534_00503845.mRNA mRNA downstream 65132 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00586494_00587461.mRNA mRNA downstream 194569 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00825304_00827619.mRNA mRNA downstream 433379 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00856394_00860868.mRNA mRNA downstream 464469 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 495192 887117 ~ 898009 (+) True CI01000350_00887155_00896486
TU581079 other downstream 107171 499096 ~ 500756 (+) True G506786
TU581251 other downstream 373385 765310 ~ 766111 (+) True G506911
TU581186 other downstream 586166 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1062638 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1062961 1455782 ~ 1455902 (+) False G507676

Expression Profile