RNA id: TU581067


Basic Information

Item Value
RNA id TU581067
length 246
lncRNA type read_through
GC content 0.48
exon number 2
gene id G506775
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 475125 ~ 562627 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATGTTCTCTGAACGTGCACTCGTGCAGACCTCTAATGCAAATAACATATCTTGCCAGGTTTCTCAGGACGGGGAACTGGGGACTGTGTGAACGCCACCACTGCAGAAAGTTTTGTTCACTTCAAGTTCAAGCACAGATGCGCTGATGCCAAAGCATCTCGGGAGCGACCGGGTTATTGTCAGACCGCCCGCTCCCGCCTAAAGTACAGGTGCTGGTCATATAATTAGAATATCATCAAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581051 lncRNA upstream 83200 391711 ~ 391925 (+) True G506760
TU581043 lncRNA upstream 100827 373916 ~ 374298 (+) True G506752
TU580983 lncRNA upstream 125971 242446 ~ 349154 (+) True G506704
TU581001 lncRNA upstream 214252 254550 ~ 254601 (+) True G506714
TU580977 lncRNA upstream 244762 227019 ~ 230363 (+) True G506699
TU581133 lncRNA downstream 7649 570276 ~ 570843 (+) True G506807
TU581129 lncRNA downstream 8535 571162 ~ 571997 (+) False G506804
TU581130 lncRNA downstream 8977 571604 ~ 571997 (+) True G506804
TU581131 lncRNA downstream 9525 572152 ~ 572617 (+) True G506805
TU581183 lncRNA downstream 131424 694051 ~ 694882 (+) True G506855
CI01000350_00361432_00364007.mRNA mRNA upstream 111047 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 130847 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 169558 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00277505_00278977.mRNA mRNA upstream 195373 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00266537_00276376.mRNA mRNA upstream 198334 265272 ~ 276791 (+) True CI01000350_00266537_00276376
CI01000350_00586494_00587461.mRNA mRNA downstream 23867 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00825304_00827619.mRNA mRNA downstream 262677 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00856394_00860868.mRNA mRNA downstream 293767 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 324490 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_01039300_01048692.mRNA mRNA downstream 475526 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
TU581251 other downstream 202683 765310 ~ 766111 (+) True G506911
TU581186 other downstream 415464 978091 ~ 978891 (+) True G506858
TU582195 other downstream 891936 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 892259 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 892259 1455782 ~ 1455902 (+) False G507676

Expression Profile