RNA id: TU581130


Basic Information

Item Value
RNA id TU581130
length 394
lncRNA type intronic
GC content 0.36
exon number 1
gene id G506804
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 571162 ~ 571997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATATAATTTGACACTCATGTGAAACTTTCTCAGCTCTCTCTCTCTTATATTTTTATGTAGCGTTTGAACCGGGATCTCCTCTGAAGAACTGAGGATATTAGTGTTTGTGGACACACATACATCCAGAGAACATTCGGATGTCGTCAGGTGGACCAAAACATTGTGTTTGCTTTGTAAAGCTATTTTGATGATCACTTTTACTCCTGTGCTGTGGAAAACATGGAGTACAGTTATTGATAATGATGAGAAATGTTTCTTGAGCATCAAAGAGACTTCTTTCACAAACATTAAGAATCTTAAATATTCAAACTTTTGGCCACCAGTGTTCATCAATCCAACAGAGTTTAGTAACAGTGAAATGATTTTGAAGGTTATGTGTCATGATACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581133 lncRNA upstream 761 570276 ~ 570843 (+) True G506807
TU581067 lncRNA upstream 8977 475125 ~ 562627 (+) True G506775
TU581051 lncRNA upstream 179679 391711 ~ 391925 (+) True G506760
TU581043 lncRNA upstream 197306 373916 ~ 374298 (+) True G506752
TU581001 lncRNA upstream 310731 254550 ~ 254601 (+) True G506714
TU581131 lncRNA downstream 155 572152 ~ 572617 (+) True G506805
TU581183 lncRNA downstream 122054 694051 ~ 694882 (+) True G506855
TU581196 lncRNA downstream 133922 705919 ~ 707274 (+) True G506867
TU581240 lncRNA downstream 177821 749818 ~ 758214 (+) False G506906
TU581239 lncRNA downstream 181326 753323 ~ 754894 (+) False G506906
CI01000350_00457534_00503845.mRNA mRNA upstream 67639 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00361432_00364007.mRNA mRNA upstream 207526 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 227326 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 266037 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00277505_00278977.mRNA mRNA upstream 291852 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00586494_00587461.mRNA mRNA downstream 14497 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00825304_00827619.mRNA mRNA downstream 253307 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00856394_00860868.mRNA mRNA downstream 284397 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 315120 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_01039300_01048692.mRNA mRNA downstream 466156 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
TU581079 other upstream 70848 499096 ~ 500756 (+) True G506786
TU581251 other downstream 193313 765310 ~ 766111 (+) True G506911
TU581186 other downstream 406094 978091 ~ 978891 (+) True G506858
TU582195 other downstream 882566 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 882889 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 882889 1455782 ~ 1455902 (+) False G507676

Expression Profile