RNA id: TU581131


Basic Information

Item Value
RNA id TU581131
length 466
lncRNA type intronic
GC content 0.34
exon number 1
gene id G506805
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 572152 ~ 572617 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATGACTTTACATTAATTTTGTCAAATGCTAACGTTTTGTTTAGGATTTTAGGTATGTTTTAACACAATGTGTGTATCCAAGGACAGCACATGGTAATTTTACACATTTTCTTTGTTTTACCCTTTCTGACACACTTACTGTGTTAAACTCATTAACACAATGACTGAGTTCAAATTAACACTATGCATTACCCCTAAACACCCATTAATGTGTAAAAATTGAACACAAGTTGCTTCATTTTTAACGCTTCCTTTCTAAAAGTGTAACATATTTCTGCATTGCAGTATTATACTATAATTTCTACAAAACCATTACATGATTTATGTATTTATGATGAAAGCAGGAAGATCCAGACCTACAGGAGTGACGATTACTGACCATTGACCGGTAAGATCCTCAGAGAGTCAGAACAACTGAAGAATGGAAAGAGTGTGTCAGTGAAGGTGGTTGTGAATGTGTGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581129 lncRNA upstream 155 571162 ~ 571997 (+) False G506804
TU581130 lncRNA upstream 155 571604 ~ 571997 (+) True G506804
TU581133 lncRNA upstream 1309 570276 ~ 570843 (+) True G506807
TU581067 lncRNA upstream 9525 475125 ~ 562627 (+) True G506775
TU581051 lncRNA upstream 180227 391711 ~ 391925 (+) True G506760
TU581183 lncRNA downstream 121434 694051 ~ 694882 (+) True G506855
TU581196 lncRNA downstream 133302 705919 ~ 707274 (+) True G506867
TU581240 lncRNA downstream 177201 749818 ~ 758214 (+) False G506906
TU581239 lncRNA downstream 180706 753323 ~ 754894 (+) False G506906
TU581236 lncRNA downstream 181164 753781 ~ 754894 (+) False G506906
CI01000350_00457534_00503845.mRNA mRNA upstream 68187 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00361432_00364007.mRNA mRNA upstream 208074 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 227874 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 266585 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00277505_00278977.mRNA mRNA upstream 292400 277173 ~ 279752 (+) True CI01000350_00277505_00278977
CI01000350_00586494_00587461.mRNA mRNA downstream 13877 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00825304_00827619.mRNA mRNA downstream 252687 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00856394_00860868.mRNA mRNA downstream 283777 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 314500 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_01039300_01048692.mRNA mRNA downstream 465536 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
TU581079 other upstream 71396 499096 ~ 500756 (+) True G506786
TU581251 other downstream 192693 765310 ~ 766111 (+) True G506911
TU581186 other downstream 405474 978091 ~ 978891 (+) True G506858
TU582195 other downstream 881946 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 882269 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 882269 1455782 ~ 1455902 (+) False G507676

Expression Profile