RNA id: TU581239


Basic Information

Item Value
RNA id TU581239
length 1270
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G506906
representative False

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 749818 ~ 758214 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGTAATATTAAACAGGGGGCAGTAAAGGTGTGTAAAACATGTAACTGTTTCTAAATCAGAGTAAAAAAGAAACACTTCAGCTGTACTAAACACATATTCTGTGATGGGTCAATGACAAACAAGAGTGTCAACAATAAACAAACAAACAAATAAATAAAAACACAAACATCAACTTAGAAACATACTCTTTGTATATGATATGGATTAGGAAAATGTTCCTACCATTTACAAGAAAAGTTTAAATGAATGACTAAAAATGTCATGTAGTGTAACAATCAAGTGAAACAAGACATTTTCCTTATTGAATCAATGAGGCTGATTTTTTTTTTTTTTTTTTTTCACAGTGTTTCTGAATCCTAGTCCTGTGATCCACCGCTCTCTTTCATAGAGATGTTTACATGTGAATAAAAGCCTAAATTAAATCTGTTAATCATTTAAAGCGAGTCTCTTCAGAAGCCTCATTCATATGGATTTATTTTACATGTTTATGAATGTTTTGAAGCATCAGAGATGAATAAACTGATGAAGATGAAGGAAAGTTGGGTTTGGAATAACATATTTTAAATATTGCCATGTAAAAAAAAGAAGATGTACATCAAGAGAAACTTACTTGAAGTTCAGTGTATTGAAGTTAACTTCAGGATTACATACAGCCAAAGAATGATATATAATAAACATTCAGATGATGATCTATTGGCTTACATCAATAAATAACACTGCCCTGGTTTCACAAAGCTGCCCATTATAAGACAATAAAACAAACATTACATATAAACACCTTTAGCACAATGTGGATGAGGTCTTGAGACAGTTCAAGTGCGCTCAACTCTAAGTCACTGGTGACTGACCAGATCTGTTGAGGAAAGATGAAAAAACTACATACACTTAAAGAAATTAATGTCTAAACATGGCTTTTTGAATATGTAGCATGTTAGTATTCTTTGAAGTAAACTGTATGTCATGTAAAATCATGATAAATCGATATCGTGCAATTCATATTAAAGGACCATTATACCATCACTTCACCATATTACTTTAGTAAAGCTAACATATATCAAATAACAGTTTAATAAACGGCGTCAAACACAGACTACATAACATTAAACACTGAATTACGTGCAATACATGTATCAAGGTCCAGTTGTTTATGAACAAAAGTTCTTCACAATACCTGTAAATAATGTTCTCTTCTATCCGTTTATCATGTGAGAGAGGACGTTATTCAAGTTTAATACCTCATATATTTTTAGCTGAAGGTTCCTGATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581196 lncRNA upstream 46049 705919 ~ 707274 (+) True G506867
TU581183 lncRNA upstream 58441 694051 ~ 694882 (+) True G506855
TU581131 lncRNA upstream 180706 572152 ~ 572617 (+) True G506805
TU581129 lncRNA upstream 181326 571162 ~ 571997 (+) False G506804
TU581261 lncRNA downstream 18462 773356 ~ 773885 (+) True G506920
TU581284 lncRNA downstream 110280 865174 ~ 869870 (+) True G506943
TU581307 lncRNA downstream 125450 880344 ~ 881175 (+) False G506964
TU581308 lncRNA downstream 125450 880344 ~ 881175 (+) True G506964
TU581343 lncRNA downstream 201784 956678 ~ 956910 (+) True G506996
CI01000350_00586494_00587461.mRNA mRNA upstream 165640 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00457534_00503845.mRNA mRNA upstream 249358 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_00361432_00364007.mRNA mRNA upstream 389245 361432 ~ 364078 (+) True CI01000350_00361432_00364007
CI01000350_00324715_00343520.mRNA mRNA upstream 409045 324715 ~ 344278 (+) True CI01000350_00324715_00343520
CI01000350_00299478_00304914.mRNA mRNA upstream 447756 299262 ~ 305567 (+) True CI01000350_00299478_00304914
CI01000350_00825304_00827619.mRNA mRNA downstream 70410 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00856394_00860868.mRNA mRNA downstream 101500 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00887155_00896486.mRNA mRNA downstream 132223 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_01039300_01048692.mRNA mRNA downstream 283259 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_01068561_01071605.mRNA mRNA downstream 313517 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
TU581079 other upstream 252567 499096 ~ 500756 (+) True G506786
TU581251 other downstream 10416 765310 ~ 766111 (+) True G506911
TU581186 other downstream 223197 978091 ~ 978891 (+) True G506858
TU582195 other downstream 699669 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 699992 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 699992 1455782 ~ 1455902 (+) False G507676

Expression Profile