RNA id: TU581139


Basic Information

Item Value
RNA id TU581139
length 329
lncRNA type intronic
GC content 0.31
exon number 1
gene id G506813
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1004530 ~ 1004858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAGATAACCCTTAAGCATCATATAATTATGCATCACAGAACAGTGAACAAACTATTTGATAAATGCTATAAAACACAAATTTGTTGAAATGATCAATCTATGTCTTCTGTAAATTGTCATTGATTTCTCATTTTTTAATCTTTTTCTATATGTATAATGGGGAGCATATCATATCCAGTGTTCCCCCAACTCTAAATTCAACATTAACACGTCACATTAAGAAATATAAACACTAAACCAATTTGCCTAGGACCCCATGTTAAAGTCTATGTTATGATGTTCCATTAATGCATAGTAATGCACAAAAACGTGGTGCTTGTGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581343 lncRNA upstream 47620 956678 ~ 956910 (+) True G506996
TU581307 lncRNA upstream 123355 880344 ~ 881175 (+) False G506964
TU581308 lncRNA upstream 123355 880344 ~ 881175 (+) True G506964
TU581284 lncRNA upstream 134660 865174 ~ 869870 (+) True G506943
TU581261 lncRNA upstream 230645 773356 ~ 773885 (+) True G506920
TU581105 lncRNA downstream 11114 1015972 ~ 1017022 (+) True G506800
TU581372 lncRNA downstream 58075 1062933 ~ 1063328 (+) True G507024
TU581419 lncRNA downstream 182293 1187151 ~ 1217232 (+) False G507059
TU581421 lncRNA downstream 182293 1187151 ~ 1215039 (+) True G507059
TU581449 lncRNA downstream 185246 1190104 ~ 1253441 (+) True G507078
CI01000350_00887155_00896486.mRNA mRNA upstream 106521 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_00856394_00860868.mRNA mRNA upstream 143454 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00825304_00827619.mRNA mRNA upstream 176855 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00586494_00587461.mRNA mRNA upstream 416847 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_00457534_00503845.mRNA mRNA upstream 500565 457057 ~ 503965 (+) True CI01000350_00457534_00503845
CI01000350_01039300_01048692.mRNA mRNA downstream 33295 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_01068561_01071605.mRNA mRNA downstream 63553 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01100195_01101995.mRNA mRNA downstream 95337 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01110658_01123802.mRNA mRNA downstream 105800 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01136425_01169812.mRNA mRNA downstream 131567 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
TU581186 other upstream 25639 978091 ~ 978891 (+) True G506858
TU581251 other upstream 238419 765310 ~ 766111 (+) True G506911
TU581079 other upstream 503774 499096 ~ 500756 (+) True G506786
TU582195 other downstream 449705 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 450028 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 450028 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 450028 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 454968 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile