RNA id: TU581372


Basic Information

Item Value
RNA id TU581372
length 396
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G507024
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1062933 ~ 1063328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACACACACACAATATATATATTCTGTAGTACAGTGGCAAGAAAACATATTATTTTGCATTAATTTGTCATAAAATTGTTATCTGATCTTCATCAAAGTCACACCACACGTATAGACGAAACACAATGTGACACACTACAACACAAACAATAATTTTCTTTAATGCCTTTATTGAACAGAACTTGTGACTTTTTTCTTTTTTTTTACCATGATGACCCACAAGTTTTTTTTTACTGTTGTGGTTGTTGTTCATGAGTCCTTGTTTGTCTTGAGCAGTTAAACTGCCCAATCTAAACTTTTCACTTAGGCCTACTTTTTTCAAAAGATTAATGGGATTTTAAATAAAGACATAATTTTATTTTTGTATGTTATGTTAACCACATTGTGTTTTGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581105 lncRNA upstream 45911 1015972 ~ 1017022 (+) True G506800
TU581139 lncRNA upstream 58075 1004530 ~ 1004858 (+) True G506813
TU581343 lncRNA upstream 106023 956678 ~ 956910 (+) True G506996
TU581307 lncRNA upstream 181758 880344 ~ 881175 (+) False G506964
TU581308 lncRNA upstream 181758 880344 ~ 881175 (+) True G506964
TU581419 lncRNA downstream 123823 1187151 ~ 1217232 (+) False G507059
TU581421 lncRNA downstream 123823 1187151 ~ 1215039 (+) True G507059
TU581449 lncRNA downstream 126776 1190104 ~ 1253441 (+) True G507078
TU581500 lncRNA downstream 242970 1306298 ~ 1313026 (+) True G507123
TU581502 lncRNA downstream 244006 1307334 ~ 1307891 (+) True G507125
CI01000350_01039300_01048692.mRNA mRNA upstream 14088 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_00887155_00896486.mRNA mRNA upstream 164924 887117 ~ 898009 (+) True CI01000350_00887155_00896486
CI01000350_00856394_00860868.mRNA mRNA upstream 201857 856394 ~ 861076 (+) True CI01000350_00856394_00860868
CI01000350_00825304_00827619.mRNA mRNA upstream 235258 825304 ~ 827675 (+) True CI01000350_00825304_00827619
CI01000350_00586494_00587461.mRNA mRNA upstream 475250 586494 ~ 587683 (+) True CI01000350_00586494_00587461
CI01000350_01068561_01071605.mRNA mRNA downstream 5083 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01100195_01101995.mRNA mRNA downstream 36867 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01110658_01123802.mRNA mRNA downstream 47330 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01136425_01169812.mRNA mRNA downstream 73097 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
CI01000350_01268618_01269611.mRNA mRNA downstream 205197 1268525 ~ 1269786 (+) True CI01000350_01268618_01269611
TU581186 other upstream 84042 978091 ~ 978891 (+) True G506858
TU581251 other upstream 296822 765310 ~ 766111 (+) True G506911
TU581079 other upstream 562177 499096 ~ 500756 (+) True G506786
TU582195 other downstream 391235 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 391558 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 391558 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 391558 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 396498 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile