RNA id: TU581449


Basic Information

Item Value
RNA id TU581449
length 282
lncRNA type read_through
GC content 0.44
exon number 2
gene id G507078
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1190104 ~ 1253441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAGACGACCATTAACACCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGGCGAAGGGAAGGAAAAGATGTGGTAGAAAAAAAGTGTACAAGCAATAGGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU581372 lncRNA upstream 126776 1062933 ~ 1063328 (+) True G507024
TU581105 lncRNA upstream 173082 1015972 ~ 1017022 (+) True G506800
TU581139 lncRNA upstream 185246 1004530 ~ 1004858 (+) True G506813
TU581343 lncRNA upstream 233194 956678 ~ 956910 (+) True G506996
TU581308 lncRNA upstream 308929 880344 ~ 881175 (+) True G506964
TU581500 lncRNA downstream 52857 1306298 ~ 1313026 (+) True G507123
TU581502 lncRNA downstream 53893 1307334 ~ 1307891 (+) True G507125
TU581522 lncRNA downstream 99979 1353420 ~ 1353878 (+) True G507144
TU582173 lncRNA downstream 146844 1400285 ~ 1400530 (+) True G507656
TU582190 lncRNA downstream 174601 1428042 ~ 1428260 (+) True G507672
CI01000350_01136425_01169812.mRNA mRNA upstream 20292 1136425 ~ 1169812 (+) True CI01000350_01136425_01169812
CI01000350_01110658_01123802.mRNA mRNA upstream 65879 1110658 ~ 1124225 (+) True CI01000350_01110658_01123802
CI01000350_01100195_01101995.mRNA mRNA upstream 87666 1100195 ~ 1102438 (+) True CI01000350_01100195_01101995
CI01000350_01068561_01071605.mRNA mRNA upstream 118325 1068411 ~ 1071779 (+) True CI01000350_01068561_01071605
CI01000350_01039300_01048692.mRNA mRNA upstream 141259 1038153 ~ 1048845 (+) True CI01000350_01039300_01048692
CI01000350_01268618_01269611.mRNA mRNA downstream 15084 1268525 ~ 1269786 (+) True CI01000350_01268618_01269611
CI01000350_01271412_01272029.mRNA mRNA downstream 17971 1271412 ~ 1273291 (+) True CI01000350_01271412_01272029
CI01000350_01289098_01292899.mRNA mRNA downstream 35657 1289098 ~ 1293079 (+) True CI01000350_01289098_01292899
CI01000350_01315313_01317803.mRNA mRNA downstream 61828 1315269 ~ 1318223 (+) True CI01000350_01315313_01317803
CI01000350_01343443_01355860.mRNA mRNA downstream 89661 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
TU581186 other upstream 211213 978091 ~ 978891 (+) True G506858
TU581251 other upstream 423993 765310 ~ 766111 (+) True G506911
TU581079 other upstream 689348 499096 ~ 500756 (+) True G506786
TU582195 other downstream 201122 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 201445 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 201445 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 201445 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 206385 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile