RNA id: TU582191


Basic Information

Item Value
RNA id TU582191
length 341
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G507673
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1428685 ~ 1429025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGAAAAGGAATAAACCACCCCTTCCAATCCGATCGAAATTTCATTCGGATCGAGCTCAATCGGATCGATTAAGGTGTTTACATGAACGTTTTTCAATCCGATTGAGCCGTCAATCCGATTACAAATGGATTATTTGGGTGCATGTAAACGTAGCCATTTTATGAACGTTATAATGCAGCTAGAGCGGGAATCAAGGCTTTGTCGGGACAGCATTCTTGCACGGAGAAGCGCTATTACACAAGTTTTTAAGATGAAGAGGTGCTCTTTGGTTTTTACTGCAGTAATTAATGTGCTCACTCACAGAATCAAACACTGCTGCATTTTATATAACACATTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582190 lncRNA upstream 425 1428042 ~ 1428260 (+) True G507672
TU582173 lncRNA upstream 28155 1400285 ~ 1400530 (+) True G507656
TU581522 lncRNA upstream 72470 1353420 ~ 1353878 (+) True G507144
TU581500 lncRNA upstream 115659 1306298 ~ 1313026 (+) True G507123
TU581502 lncRNA upstream 120794 1307334 ~ 1307891 (+) True G507125
TU582204 lncRNA downstream 29050 1458862 ~ 1458971 (+) True G507683
TU582222 lncRNA downstream 66385 1495410 ~ 1558319 (+) True G507700
TU582220 lncRNA downstream 135641 1564666 ~ 1565610 (+) True G507698
TU582219 lncRNA downstream 145881 1574906 ~ 1595941 (+) True G507697
TU582370 lncRNA downstream 219704 1648729 ~ 1648957 (+) True G507843
CI01000350_01374131_01407038.mRNA mRNA upstream 21647 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01357162_01358608.mRNA mRNA upstream 70039 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01343443_01355860.mRNA mRNA upstream 72800 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
CI01000350_01315313_01317803.mRNA mRNA upstream 110462 1315269 ~ 1318223 (+) True CI01000350_01315313_01317803
CI01000350_01289098_01292899.mRNA mRNA upstream 135606 1289098 ~ 1293079 (+) True CI01000350_01289098_01292899
CI01000350_01454880_01462490.mRNA mRNA downstream 25855 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_01583582_01585575.mRNA mRNA downstream 154458 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
CI01000350_01625265_01628425.mRNA mRNA downstream 196118 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01748423_01750654.mRNA mRNA downstream 319398 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01860321_01869386.mRNA mRNA downstream 430874 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
TU581186 other upstream 449794 978091 ~ 978891 (+) True G506858
TU581251 other upstream 662574 765310 ~ 766111 (+) True G506911
TU581079 other upstream 927929 499096 ~ 500756 (+) True G506786
TU582195 other downstream 25538 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 25861 1455782 ~ 1455902 (+) False G507676
TU582196 other downstream 25861 1455782 ~ 1455902 (+) False G507676
TU582197 other downstream 25861 1455782 ~ 1456034 (+) True G507676
TU582206 other downstream 30801 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490

Expression Profile