Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU582222 |
| length | 891 |
| lncRNA type | read_through |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G507700 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000350 |
| NCBI id | null |
| chromosome length | 2572209 |
| location | 1495410 ~ 1558319 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU582204 | lncRNA | upstream | 36439 | 1458862 ~ 1458971 (+) | True | G507683 |
| TU582191 | lncRNA | upstream | 66385 | 1428685 ~ 1429025 (+) | True | G507673 |
| TU582190 | lncRNA | upstream | 67150 | 1428042 ~ 1428260 (+) | True | G507672 |
| TU582173 | lncRNA | upstream | 94880 | 1400285 ~ 1400530 (+) | True | G507656 |
| TU581522 | lncRNA | upstream | 139195 | 1353420 ~ 1353878 (+) | True | G507144 |
| TU582220 | lncRNA | downstream | 6347 | 1564666 ~ 1565610 (+) | True | G507698 |
| TU582219 | lncRNA | downstream | 16587 | 1574906 ~ 1595941 (+) | True | G507697 |
| TU582370 | lncRNA | downstream | 90410 | 1648729 ~ 1648957 (+) | True | G507843 |
| TU582374 | lncRNA | downstream | 104372 | 1662691 ~ 1662996 (+) | True | G507847 |
| TU582360 | lncRNA | downstream | 133212 | 1691531 ~ 1692427 (+) | True | G507833 |
| CI01000350_01454880_01462490.mRNA | mRNA | upstream | 32920 | 1454880 ~ 1462490 (+) | False | CI01000350_01454880_01462490 |
| CI01000350_01374131_01407038.mRNA | mRNA | upstream | 88372 | 1373797 ~ 1407038 (+) | True | CI01000350_01374131_01407038 |
| CI01000350_01357162_01358608.mRNA | mRNA | upstream | 136764 | 1356360 ~ 1358646 (+) | True | CI01000350_01357162_01358608 |
| CI01000350_01343443_01355860.mRNA | mRNA | upstream | 139525 | 1343102 ~ 1355885 (+) | False | CI01000350_01343443_01355860 |
| CI01000350_01315313_01317803.mRNA | mRNA | upstream | 177187 | 1315269 ~ 1318223 (+) | True | CI01000350_01315313_01317803 |
| CI01000350_01583582_01585575.mRNA | mRNA | downstream | 25164 | 1583483 ~ 1585964 (+) | True | CI01000350_01583582_01585575 |
| CI01000350_01625265_01628425.mRNA | mRNA | downstream | 66824 | 1625143 ~ 1628624 (+) | True | CI01000350_01625265_01628425 |
| CI01000350_01748423_01750654.mRNA | mRNA | downstream | 190104 | 1748423 ~ 1751056 (+) | True | CI01000350_01748423_01750654 |
| CI01000350_01860321_01869386.mRNA | mRNA | downstream | 301580 | 1859899 ~ 1870119 (+) | True | CI01000350_01860321_01869386 |
| CI01000350_02051537_02098878.mRNA | mRNA | downstream | 493218 | 2051537 ~ 2099018 (+) | True | CI01000350_02051537_02098878 |
| TU582205 | other | upstream | 33173 | 1461119 ~ 1462237 (+) | True | CI01000350_01454880_01462490 |
| TU582206 | other | upstream | 33395 | 1459826 ~ 1462015 (+) | False | CI01000350_01454880_01462490 |
| TU582197 | other | upstream | 39376 | 1455782 ~ 1456034 (+) | True | G507676 |
| TU582195 | other | upstream | 39508 | 1455782 ~ 1455902 (+) | False | G507676 |
| TU582194 | other | upstream | 39508 | 1455782 ~ 1455902 (+) | False | G507676 |
| TU582500 | other | downstream | 829304 | 2390180 ~ 2390292 (+) | True | G507957 |
