RNA id: TU582219


Basic Information

Item Value
RNA id TU582219
length 345
lncRNA type read_through
GC content 0.50
exon number 2
gene id G507697
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1574906 ~ 1595941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACAGCTGTACAGCCCACCTGTGATGTTTGCCCCCTGATTGGATAAAGCCCTGGCTTTGGGAGCACCAATCAACAATTCTTTTATCAGTAGGCTGGAGCTGCCGGTGCAAGGCGAGGGAGAATCCGAAGAGGCTGCCCGGCTGACCATTCTTCCTCAGGACGTTTTGCGTGTCCAGGTTAAATGCACTTGTAGAAGTCCATATGAGCAACGACAAAATGCACAGGTTCCGAGAGAGTCCCTCCTCAAAGAGCTCCATTACCTGTAATTAATATGGTTGTATGAATATAGCCCTTGTTTGCAGTAGTTCCCGCCGCACTGAGAGGACAGGATCTGTAATCCGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582220 lncRNA upstream 9296 1564666 ~ 1565610 (+) True G507698
TU582222 lncRNA upstream 16587 1495410 ~ 1558319 (+) True G507700
TU582204 lncRNA upstream 115935 1458862 ~ 1458971 (+) True G507683
TU582191 lncRNA upstream 145881 1428685 ~ 1429025 (+) True G507673
TU582190 lncRNA upstream 146646 1428042 ~ 1428260 (+) True G507672
TU582370 lncRNA downstream 52788 1648729 ~ 1648957 (+) True G507843
TU582374 lncRNA downstream 66750 1662691 ~ 1662996 (+) True G507847
TU582360 lncRNA downstream 95590 1691531 ~ 1692427 (+) True G507833
TU582392 lncRNA downstream 172209 1768150 ~ 1769606 (+) True G507864
TU582450 lncRNA downstream 221856 1817797 ~ 1819453 (+) True G507913
CI01000350_01454880_01462490.mRNA mRNA upstream 112416 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_01374131_01407038.mRNA mRNA upstream 167868 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01357162_01358608.mRNA mRNA upstream 216260 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01343443_01355860.mRNA mRNA upstream 219021 1343102 ~ 1355885 (+) False CI01000350_01343443_01355860
CI01000350_01315313_01317803.mRNA mRNA upstream 256683 1315269 ~ 1318223 (+) True CI01000350_01315313_01317803
CI01000350_01625265_01628425.mRNA mRNA downstream 29202 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01748423_01750654.mRNA mRNA downstream 152482 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01860321_01869386.mRNA mRNA downstream 263958 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_02051537_02098878.mRNA mRNA downstream 455596 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_02100526_02105123.mRNA mRNA downstream 504585 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
TU582221 other upstream 55078 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 112669 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 112891 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 118872 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 119004 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 791682 2390180 ~ 2390292 (+) True G507957

Expression Profile