RNA id: TU582370


Basic Information

Item Value
RNA id TU582370
length 229
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G507843
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1648729 ~ 1648957 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAGATGGAAAGGATCTCAAGCTGAATAGCTGAAGATGTTACTCTTTTACGTGTACCCATTAATAGACATGGTACTTCCTTGAAAATAAATTCCAGCATAGCACTACAACATCCATAATGAAAAGAGCCTTCACAATAGATAATGCTTTACAATGAACTCTGTTGGAGGGCTAAATATGGCAATTTCTCTGAAAAAAACGCCATCTCCGCATCGCTTTTATAATATTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582219 lncRNA upstream 52788 1574906 ~ 1595941 (+) True G507697
TU582220 lncRNA upstream 83119 1564666 ~ 1565610 (+) True G507698
TU582222 lncRNA upstream 90410 1495410 ~ 1558319 (+) True G507700
TU582204 lncRNA upstream 189758 1458862 ~ 1458971 (+) True G507683
TU582191 lncRNA upstream 219704 1428685 ~ 1429025 (+) True G507673
TU582374 lncRNA downstream 13734 1662691 ~ 1662996 (+) True G507847
TU582360 lncRNA downstream 42574 1691531 ~ 1692427 (+) True G507833
TU582392 lncRNA downstream 119193 1768150 ~ 1769606 (+) True G507864
TU582450 lncRNA downstream 168840 1817797 ~ 1819453 (+) True G507913
TU582452 lncRNA downstream 170569 1819526 ~ 1821643 (+) True G507915
CI01000350_01625265_01628425.mRNA mRNA upstream 20105 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01583582_01585575.mRNA mRNA upstream 62765 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
CI01000350_01454880_01462490.mRNA mRNA upstream 186239 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_01374131_01407038.mRNA mRNA upstream 241691 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01357162_01358608.mRNA mRNA upstream 290083 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01748423_01750654.mRNA mRNA downstream 99466 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01860321_01869386.mRNA mRNA downstream 210942 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_02051537_02098878.mRNA mRNA downstream 402580 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_02100526_02105123.mRNA mRNA downstream 451569 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02225123_02231703.mRNA mRNA downstream 576090 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
TU582221 other upstream 128901 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 186492 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 186714 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 192695 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 192827 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 738666 2390180 ~ 2390292 (+) True G507957

Expression Profile