RNA id: TU582374


Basic Information

Item Value
RNA id TU582374
length 306
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G507847
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1662691 ~ 1662996 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTTTTTTCTACCACATCTTTTCCTTTCCTTCGCCTCTCTATTAATGTGCTTGGACACAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAAACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTAGAGTGTGGCACCAGGTGTCTTCAAAGTTGAACCTTTTCACAATATTCTAATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582370 lncRNA upstream 13734 1648729 ~ 1648957 (+) True G507843
TU582219 lncRNA upstream 66750 1574906 ~ 1595941 (+) True G507697
TU582220 lncRNA upstream 97081 1564666 ~ 1565610 (+) True G507698
TU582222 lncRNA upstream 104372 1495410 ~ 1558319 (+) True G507700
TU582204 lncRNA upstream 203720 1458862 ~ 1458971 (+) True G507683
TU582360 lncRNA downstream 28535 1691531 ~ 1692427 (+) True G507833
TU582392 lncRNA downstream 105154 1768150 ~ 1769606 (+) True G507864
TU582450 lncRNA downstream 154801 1817797 ~ 1819453 (+) True G507913
TU582452 lncRNA downstream 156530 1819526 ~ 1821643 (+) True G507915
TU582481 lncRNA downstream 247347 1910343 ~ 1923325 (+) True G507939
CI01000350_01625265_01628425.mRNA mRNA upstream 34067 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01583582_01585575.mRNA mRNA upstream 76727 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
CI01000350_01454880_01462490.mRNA mRNA upstream 200201 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_01374131_01407038.mRNA mRNA upstream 255653 1373797 ~ 1407038 (+) True CI01000350_01374131_01407038
CI01000350_01357162_01358608.mRNA mRNA upstream 304045 1356360 ~ 1358646 (+) True CI01000350_01357162_01358608
CI01000350_01748423_01750654.mRNA mRNA downstream 85427 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01860321_01869386.mRNA mRNA downstream 196903 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_02051537_02098878.mRNA mRNA downstream 388541 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_02100526_02105123.mRNA mRNA downstream 437530 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02225123_02231703.mRNA mRNA downstream 562051 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
TU582221 other upstream 142863 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 200454 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 200676 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 206657 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 206789 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 724627 2390180 ~ 2390292 (+) True G507957

Expression Profile