RNA id: TCONS_00020686



Basic Information


Item Value
RNA id TCONS_00020686
length 4614
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_010550
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 15369634 ~ 15387459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AAAAAGAGTCCTGCGAATGTAAGGCTTACAGGAAACATAAACTTAAAGCGTCTGGAAGAAATTAGGCGCAGAAAAAGACAAGTCCACTACTTCAACCTGTGcgcttggggaaaaaaaaaacttgaatgaaTTACAGCTTGATTCACCAACATTGACTACTGTTGGATgacttttttaaagataaagaagaaaaaaacgtttaaagtcattttttttcttttcttaaattaGCTGACAACTTCAGAATGAACTTCCAAAATGTTCACGCAGACCTCATCACGACAGCAAACTGATGCaaactttaaataatgttttggacGAGGCGAGATGTTATGTGGAAAACGTGGATACTGTACATTTTTGCAATTCAAAACAAGGAGTTTTTAGATGCTCCATGCCGGTCTCCTCTATACTTTCCCCCAAAACTTGTATGGGAAGGTTTGTAGAGTGTCTGGAGAGTGCAGACCCTCGTCGGACAGCATCCCTGTTCAACTAACGGGACATCTCCAAAGAGCTGCTCCAAGATGAGATGTGATAAAGCGGTCAGCTACTTAAGGATTGTTGGGACGACACTGTTCGGCATTTCACTGCTTGTGGGAATCTCTACTGCTTATATCATGGGGTATAAGCTTGTAACAACTCCGGGCAACTATTTGTCCTTTGGTCTTTATGGAGCAATTCTTGTCATCCACCTCATCATCCAAAGTGTGTTTGCCCTACTGGAACACAGGAACATGAAACGCTCCCTGGAAACACCAATCAAACTCAACAAGTCACTGGCCCTATGCATCGCAGCCTATCAGGAAGACCCCAACTACCTGAGAAAGTGTTTAATATCAGTGAAGAGGCTCACGTATCCGGGTATAAAGGTCATAATGGTTATCGATGGGAACAACGATGATGACTGCTACATGATGGAGATCTTTCGAGAAATCATGGGCCGGGACAAGGCAGCCACGTACATTTGGAAAAGCAACTATCACCACAGAGGACCCGAAGAAACTGAAGAATCATACGCAACAAGCTTGCAGCATGTTTCTCACCTGGTTCTCAATAATAAGTGTGTGTGCATCATGCAGAAGTGGGGCGGGAAAAGAGAGGTCATGTACACCGCCTTCAAAGCCCTGGGAAGAAGTGTTGACTATGTACAGGTTTGTGATTCAGACACCATGCTGGACCCGGCCTCCTCTGTAGAGATGGTGAAGGTTCTAGAAGAAGATCCCAATGTTGGAGGAGTAGGTGGAGATGTGCAGATATTGAACAAATATGAGTCGTGGGTCTCCTTCCTGAGCAGCGTGAGGTATTGGATGGCGTTCAACATTGAAAGAGCCTGCCAGTCATATTTCGGGTGCGTTCAATGTATCAGCGGACCCTTGGGAATGTACAGGAACTCCCTCCTCCATGAGTTCCTGGAGGACTGGTATGATCAGACTTTCATGGGAAGCCACTGCAGTTTTGGCGATGACCGCCATCTGACCAATCGAGTACTGAGCTTGGGATATGCCACGAAATACACCGCGCGCTCCAAGTGCTTGACCGAGACGCCCATTACCTACCTGCGCTGGCTCAACCAACAAACCCGCTGGAGTAAATCCTATTTCAGAGAGTGGCTTTACAACTCCTTGTGGTTCCACAAGCACCACTTGTGGATGACTTACGAGGCCGTCATCACCGGCTTCTTCCCGTTCTTCCTTATCGCCACTGCCATTCAACTGTTCTACCAGGGCAGGATCTGGAATATCCTTCTGTTCCTGCTGATCGTCCAGGTCGTGGCACTCATAAAGTCCTCATTTGCCAGTTGCCTCCGAGGCAACATAGTCATGGTCTTCATGTCATTCTACTCAGTGTTATACATGTCAAGTCTGCTACCGGCAAAAATGTTTGCAATAGCCACCATAAACAAATCCGGATGGGGAACGTCTGGAAGGAAGACCGTGGTGGTGAACTTCATCGGACTCATTCCAATCTCAATTTGGTTCACTATTCTTTTCGTTGGCATTATTTATACCATAATCCAAGAGACGCGAAAACCCTTTCCTGAATCCGAAAAGGTGGTTTTGATAATTGGCGCAATCGTTTATATCAGCTACTGGGTTGTGTTTTTGACTTTGTACGCTGTCCTCATTATGAAGTGTGGCAAGAGGAAGAAAGGACAGCAGTATGACATGGTTCTTGACGTATAGTATTTCCCGTGCCCTTCATCCTTTTCTACGTTTACATTAAAGACAGACTGCTATCTGAATGTGGACCTTCCACAGGAAGTGACACTGTAAGGAGACATCAATGCTGCTGTGACTGTCACTAAGAGTATTCCTTTAAAGTGATGAAGGAATATGTTTTGATATGTGAGCTTTGACAGTCTTGATGTTTTAGTTATCCACCATCAGATGACAATTTCTTTGCACTTTTACAATCACTCTTGTTATACATAATGCTTGATATAGAACTTTTAAGGAACAAAATACCTCAGTGGTTGTGTTAGCATTGTGTGAGTGTTTGGGATAGTCTGTGAGActgttttttatgtaatttatgattttttatcaaaaaatttttttgttttatatatatatatataaaatatataatgtatacatttttgaCTGAAATCCAAAACAGAATTTGTGCTGTACTTTTGtttgcataatgtattttattgccTTTttatagatcttttttttttccttttttttattatcaccAAAGATTCTCTATTTTCATTAAATATGaggaaatgtaatgttttaagaCTTGCCTATCTGACCAAAATGTGAAATTAGGAGCTGGATTTGTCTCTGTGATGACAGCAATAAAAGGCAAATCTATGGATAAGTTATTCATTTTCTTTGACAATAAGGGCGAAAAACCTGTGTTATAAGTATATGGAGGAAAGACCAGTCTATTTATATGGTTTATAGCTTTATTACATGATTGTTAGctaaatatttgtaatatgaaAATGTCATTTGCTGGTTCGATTGAATGTTTTGAATTGTCCCACACAAACTATGCAATTTCAGCATGTGCCAATGTCAAATTGCAATGCAAATTCCCAAGAAAAAGTGACACAGGAACatttgcacatgcacacacacacacattggtattTGTGGTTTACAGGTACTCTTTGTAGGCATAAAAGTagtcactgtaaaataaaataaaaaacaaaacgtgTTATATGACCCTACCCACACCTACACCGTTAATTCTAACAGGAAACtagtgaaaaatattaaatttaaaaaagtatgattattaagcattttgaattacaaggacacataAACCTTTCATTATATAATAAATCCTGTAAACTACACACAAAACAAAGGCACTGATACCTTGTTTCATACAACATTCTGAAATCTATCAACATTTGCATTGCTTTTCCAGTGATACCAAACCTGAATTTTCAAGTAGCACTGTGCCTTATTATCTTGGGAAAGCcttgattttatttattgaacatgaaAAGACCCCCAAAAAGTGTGTttattaagcattttgaattatttattcattttctcgtcggcttagtccctttattaatccggggtcgccacagctgaataacccgccaacttatccagcaagttttttacgcagcggatgcccttccagccgcaacccatcttttggaaacattcacatacacattcacacacacactcatacactatggacaatttagcctacccagttcacctgtcccgcatgtctttggactgtgggggaaaccggagcacccggaggaaacccacacgaatgcagggagaacatgcaaactccacacagaaatgccaactgagctgaggttcgaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgtcactgcctcgCCCATTTTGAATTTATAAGgacacaaaacattttctcataAACTACCGTAATAGAGTACAACCCCCTGTCCTTATATGATAAAACCTATAAACCACACACAGACAAAGGCGCCAATACCTTGTGACCGCTGTTGTTTTATACAACCTTTTGTAATCCATCAACATTTGCATTGCTTTTCCAGTGATACCAAACTTGAATTTCCAAGTATCACCATGCCTTAATATCCTGGAAAAGCcttgattttatttattgaatgtgAAAAGACCCTAAAGCGTATGATTAGTACatattttgaattacaaggacacaagaCATTTTCTCATAAACCACTGTAGTGAGTACAACCAcctgtttaattatttaacaaaacctgcaaaccacacacacacaaaggcatcAATAGCTTGTGACCGTTGTTTTATACAACCTTGTGTAATTCATCAGCATTTGCATTGCTTTTCCAGTGATACCATACCTGTATTTCCAAGTATCACCATGCCTTAATATCCTGGAAAAGCCTTGATTTTATTTACcagcaatttttttaatgtttaccaaatgttttaatgttatgGTTTGAATTATATACAAAAGAGGCAACTTTTGATGATAAGTATAGTGTTTTTGTAGTACAGTAAAAATTTGATTGTAATTGATGAGGGCTTTTTTGAGGCAGTATTGTCATAAAGCACTTTTGTGTTTGtgccaaataataaaaaagtacattataaTGCC

Function


GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0036302 atrioventricular canal development biological_process
GO:0001756 somitogenesis biological_process
GO:0035810 positive regulation of urine volume biological_process
GO:0003146 heart jogging biological_process
GO:0070295 renal water absorption biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0045226 extracellular polysaccharide biosynthetic process biological_process
GO:0001568 blood vessel development biological_process
GO:0031101 fin regeneration biological_process
GO:0085029 extracellular matrix assembly biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050501 hyaluronan synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020828-1 Predicted to enable hyaluronan synthase activity. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and fin regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; pericardial region; presumptive paraxial mesoderm; and swim bladder bud. Orthologous to human HAS2 (hyaluronan synthase 2).

Ensembl:

ensembl_id ENSDART00000053754

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00020680 lncRNA downstream 926245 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00021791 lncRNA downstream 926437 14436274 ~ 14443197 (-) True XLOC_010545
TCONS_00020679 lncRNA downstream 930750 14431515 ~ 14438884 (-) False XLOC_010545
TCONS_00020678 lncRNA downstream 935977 14431515 ~ 14433657 (-) False XLOC_010545
TCONS_00021790 lncRNA downstream 935978 14426860 ~ 14433656 (-) False XLOC_010545
TCONS_00020687 lncRNA upstream 320745 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020688 lncRNA upstream 391700 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00021792 lncRNA upstream 398778 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00022134 lncRNA upstream 879097 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 1077735 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020685 mRNA downstream 106535 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020684 mRNA downstream 272121 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020683 mRNA downstream 782302 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020682 mRNA downstream 817435 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020681 mRNA downstream 834910 14528374 ~ 14534724 (-) False XLOC_010546
TCONS_00020690 mRNA upstream 555428 15942887 ~ 15988320 (-) True XLOC_010555
TCONS_00020691 mRNA upstream 654184 16041643 ~ 16120941 (-) True XLOC_010556
TCONS_00020692 mRNA upstream 761302 16148761 ~ 16152199 (-) True XLOC_010557
TCONS_00020693 mRNA upstream 777570 16165029 ~ 16182319 (-) True XLOC_010558
TCONS_00020694 mRNA upstream 822749 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020674 other downstream 972935 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 1410749 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 1551694 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 1698415 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 1827174 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020689 other upstream 426047 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 1185955 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 1290249 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 1732605 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 1734539 17121998 ~ 17129466 (-) False XLOC_010577

Expression Profile


Expression of TCONS_00020686 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.
//

Expression of TCONS_00020686 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_06508677_06514489.mRNA True 2376 mRNA 0.44 5 CI01000016 6508137 ~ 6514489 (-)
bowfin (Amia calva) AMCG00002611 True 3457 mRNA 0.41 4 CM030136.1 22694206 ~ 22705745 (-)