Item | Value |
---|---|
RNA id | TCONS_00020686 |
length | 4614 |
RNA type | mRNA |
GC content | 0.40 |
exon number | 4 |
gene id | XLOC_010550 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 15369634 ~ 15387459 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0042074 | cell migration involved in gastrulation | biological_process |
GO:0021535 | cell migration in hindbrain | biological_process |
GO:0036302 | atrioventricular canal development | biological_process |
GO:0001756 | somitogenesis | biological_process |
GO:0035810 | positive regulation of urine volume | biological_process |
GO:0003146 | heart jogging | biological_process |
GO:0070295 | renal water absorption | biological_process |
GO:2000223 | regulation of BMP signaling pathway involved in heart jogging | biological_process |
GO:0003171 | atrioventricular valve development | biological_process |
GO:0035050 | embryonic heart tube development | biological_process |
GO:0003181 | atrioventricular valve morphogenesis | biological_process |
GO:0030213 | hyaluronan biosynthetic process | biological_process |
GO:0045226 | extracellular polysaccharide biosynthetic process | biological_process |
GO:0001568 | blood vessel development | biological_process |
GO:0031101 | fin regeneration | biological_process |
GO:0085029 | extracellular matrix assembly | biological_process |
GO:0060030 | dorsal convergence | biological_process |
GO:0001947 | heart looping | biological_process |
GO:0008078 | mesodermal cell migration | biological_process |
GO:0005887 | integral component of plasma membrane | cellular_component |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0050501 | hyaluronan synthase activity | molecular_function |
id | description |
---|---|
ZDB-GENE-020828-1 | Predicted to enable hyaluronan synthase activity. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and fin regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; pericardial region; presumptive paraxial mesoderm; and swim bladder bud. Orthologous to human HAS2 (hyaluronan synthase 2). |
ensembl_id | ENSDART00000053754 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00020680 | lncRNA | downstream | 926245 | 14431515 ~ 14443389 (-) | False | XLOC_010545 |
TCONS_00021791 | lncRNA | downstream | 926437 | 14436274 ~ 14443197 (-) | True | XLOC_010545 |
TCONS_00020679 | lncRNA | downstream | 930750 | 14431515 ~ 14438884 (-) | False | XLOC_010545 |
TCONS_00020678 | lncRNA | downstream | 935977 | 14431515 ~ 14433657 (-) | False | XLOC_010545 |
TCONS_00021790 | lncRNA | downstream | 935978 | 14426860 ~ 14433656 (-) | False | XLOC_010545 |
TCONS_00020687 | lncRNA | upstream | 320745 | 15708204 ~ 15709144 (-) | True | XLOC_010551 |
TCONS_00020688 | lncRNA | upstream | 391700 | 15779159 ~ 15780407 (-) | True | XLOC_010552 |
TCONS_00021792 | lncRNA | upstream | 398778 | 15786237 ~ 15786804 (-) | True | XLOC_010553 |
TCONS_00022134 | lncRNA | upstream | 879097 | 16266556 ~ 16270435 (-) | True | XLOC_010562 |
TCONS_00020702 | lncRNA | upstream | 1077735 | 16465194 ~ 16470842 (-) | True | XLOC_010564 |
TCONS_00020685 | mRNA | downstream | 106535 | 15164983 ~ 15263099 (-) | True | XLOC_010549 |
TCONS_00020684 | mRNA | downstream | 272121 | 15052513 ~ 15097513 (-) | True | XLOC_010548 |
TCONS_00020683 | mRNA | downstream | 782302 | 14572008 ~ 14587332 (-) | True | XLOC_010547 |
TCONS_00020682 | mRNA | downstream | 817435 | 14528556 ~ 14552199 (-) | True | XLOC_010546 |
TCONS_00020681 | mRNA | downstream | 834910 | 14528374 ~ 14534724 (-) | False | XLOC_010546 |
TCONS_00020690 | mRNA | upstream | 555428 | 15942887 ~ 15988320 (-) | True | XLOC_010555 |
TCONS_00020691 | mRNA | upstream | 654184 | 16041643 ~ 16120941 (-) | True | XLOC_010556 |
TCONS_00020692 | mRNA | upstream | 761302 | 16148761 ~ 16152199 (-) | True | XLOC_010557 |
TCONS_00020693 | mRNA | upstream | 777570 | 16165029 ~ 16182319 (-) | True | XLOC_010558 |
TCONS_00020694 | mRNA | upstream | 822749 | 16210208 ~ 16212615 (-) | True | XLOC_010559 |
TCONS_00020674 | other | downstream | 972935 | 14385320 ~ 14396699 (-) | True | XLOC_010543 |
TCONS_00020665 | other | downstream | 1410749 | 13957756 ~ 13958885 (-) | True | XLOC_010535 |
TCONS_00020657 | other | downstream | 1551694 | 13813970 ~ 13817940 (-) | True | XLOC_010529 |
TCONS_00020651 | other | downstream | 1698415 | 13668166 ~ 13671219 (-) | True | XLOC_010526 |
TCONS_00020641 | other | downstream | 1827174 | 13522299 ~ 13542460 (-) | False | XLOC_010519 |
TCONS_00020689 | other | upstream | 426047 | 15813506 ~ 15814501 (-) | True | XLOC_010554 |
TCONS_00020706 | other | upstream | 1185955 | 16573414 ~ 16573530 (-) | True | XLOC_010567 |
TCONS_00020716 | other | upstream | 1290249 | 16677708 ~ 16692267 (-) | True | XLOC_010571 |
TCONS_00020722 | other | upstream | 1732605 | 17120064 ~ 17120186 (-) | True | XLOC_010576 |
TCONS_00020724 | other | upstream | 1734539 | 17121998 ~ 17129466 (-) | False | XLOC_010577 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000016_06508677_06514489.mRNA | True | 2376 | mRNA | 0.44 | 5 | CI01000016 | 6508137 ~ 6514489 (-) |
bowfin (Amia calva) | AMCG00002611 | True | 3457 | mRNA | 0.41 | 4 | CM030136.1 | 22694206 ~ 22705745 (-) |