Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU582450 |
| length | 1657 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G507913 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000350 |
| NCBI id | null |
| chromosome length | 2572209 |
| location | 1817797 ~ 1819453 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU582392 | lncRNA | upstream | 48191 | 1768150 ~ 1769606 (+) | True | G507864 |
| TU582360 | lncRNA | upstream | 125370 | 1691531 ~ 1692427 (+) | True | G507833 |
| TU582374 | lncRNA | upstream | 154801 | 1662691 ~ 1662996 (+) | True | G507847 |
| TU582370 | lncRNA | upstream | 168840 | 1648729 ~ 1648957 (+) | True | G507843 |
| TU582219 | lncRNA | upstream | 221856 | 1574906 ~ 1595941 (+) | True | G507697 |
| TU582452 | lncRNA | downstream | 73 | 1819526 ~ 1821643 (+) | True | G507915 |
| TU582481 | lncRNA | downstream | 90890 | 1910343 ~ 1923325 (+) | True | G507939 |
| TU582582 | lncRNA | downstream | 353113 | 2172566 ~ 2172808 (+) | True | G508031 |
| TU582584 | lncRNA | downstream | 356123 | 2175576 ~ 2175836 (+) | True | G508033 |
| TU582585 | lncRNA | downstream | 356480 | 2175933 ~ 2176152 (+) | True | G508034 |
| CI01000350_01748423_01750654.mRNA | mRNA | upstream | 66741 | 1748423 ~ 1751056 (+) | True | CI01000350_01748423_01750654 |
| CI01000350_01625265_01628425.mRNA | mRNA | upstream | 189173 | 1625143 ~ 1628624 (+) | True | CI01000350_01625265_01628425 |
| CI01000350_01583582_01585575.mRNA | mRNA | upstream | 231833 | 1583483 ~ 1585964 (+) | True | CI01000350_01583582_01585575 |
| CI01000350_01454880_01462490.mRNA | mRNA | upstream | 355307 | 1454880 ~ 1462490 (+) | False | CI01000350_01454880_01462490 |
| CI01000350_01374131_01407038.mRNA | mRNA | upstream | 410759 | 1373797 ~ 1407038 (+) | True | CI01000350_01374131_01407038 |
| CI01000350_01860321_01869386.mRNA | mRNA | downstream | 40446 | 1859899 ~ 1870119 (+) | True | CI01000350_01860321_01869386 |
| CI01000350_02051537_02098878.mRNA | mRNA | downstream | 232084 | 2051537 ~ 2099018 (+) | True | CI01000350_02051537_02098878 |
| CI01000350_02100526_02105123.mRNA | mRNA | downstream | 281073 | 2100526 ~ 2105265 (+) | True | CI01000350_02100526_02105123 |
| CI01000350_02225123_02231703.mRNA | mRNA | downstream | 405594 | 2225047 ~ 2232060 (+) | True | CI01000350_02225123_02231703 |
| CI01000350_02326331_02328418.mRNA | mRNA | downstream | 506878 | 2326331 ~ 2328925 (+) | True | CI01000350_02326331_02328418 |
| TU582221 | other | upstream | 297969 | 1515709 ~ 1519828 (+) | True | G507699 |
| TU582205 | other | upstream | 355560 | 1461119 ~ 1462237 (+) | True | CI01000350_01454880_01462490 |
| TU582206 | other | upstream | 355782 | 1459826 ~ 1462015 (+) | False | CI01000350_01454880_01462490 |
| TU582197 | other | upstream | 361763 | 1455782 ~ 1456034 (+) | True | G507676 |
| TU582196 | other | upstream | 361895 | 1455782 ~ 1455902 (+) | False | G507676 |
| TU582500 | other | downstream | 568170 | 2390180 ~ 2390292 (+) | True | G507957 |
