RNA id: TU582481


Basic Information

Item Value
RNA id TU582481
length 226
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G507939
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 1910343 ~ 1923325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATAATCCTAGAATGTTTTCATCAAAAACCTTAATTTCTTTTCGACTGAAGAAAGAAGGACATGGACATCTTGGATGACATGGGGCGACATCTCTTCTCTTCTCTGATGACGAGGGCGGGGCAACCTGTCACTCATATGAGATCCACCAATAGAAAACCACAACCATCCAATCAATTCACCATGGACAAAATCAAGCCCCGCCCTACATTTGTTCTTGTTCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582452 lncRNA upstream 88700 1819526 ~ 1821643 (+) True G507915
TU582450 lncRNA upstream 90890 1817797 ~ 1819453 (+) True G507913
TU582392 lncRNA upstream 140737 1768150 ~ 1769606 (+) True G507864
TU582360 lncRNA upstream 217916 1691531 ~ 1692427 (+) True G507833
TU582374 lncRNA upstream 247347 1662691 ~ 1662996 (+) True G507847
TU582582 lncRNA downstream 249241 2172566 ~ 2172808 (+) True G508031
TU582584 lncRNA downstream 252251 2175576 ~ 2175836 (+) True G508033
TU582585 lncRNA downstream 252608 2175933 ~ 2176152 (+) True G508034
TU582506 lncRNA downstream 254831 2178156 ~ 2179980 (+) False G507961
TU582505 lncRNA downstream 254897 2178222 ~ 2179980 (+) True G507961
CI01000350_01860321_01869386.mRNA mRNA upstream 40224 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_01748423_01750654.mRNA mRNA upstream 159287 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01625265_01628425.mRNA mRNA upstream 281719 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_01583582_01585575.mRNA mRNA upstream 324379 1583483 ~ 1585964 (+) True CI01000350_01583582_01585575
CI01000350_01454880_01462490.mRNA mRNA upstream 447853 1454880 ~ 1462490 (+) False CI01000350_01454880_01462490
CI01000350_02051537_02098878.mRNA mRNA downstream 128212 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_02100526_02105123.mRNA mRNA downstream 177201 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02225123_02231703.mRNA mRNA downstream 301722 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02326331_02328418.mRNA mRNA downstream 403006 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02342610_02352568.mRNA mRNA downstream 419285 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
TU582221 other upstream 390515 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 448106 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 448328 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 454309 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 454441 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 464298 2390180 ~ 2390292 (+) True G507957

Expression Profile