RNA id: TU582585


Basic Information

Item Value
RNA id TU582585
length 220
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G508034
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2175933 ~ 2176152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAGCTAGTTATTATAGTTAATAAATATGGATATTTTTCTTACAAAAATGCATTGCTTCATTTCAGAAGGCCTTTATTAACCCACTGGAGCCGTATGGATTACTTTTATGACGGATGGATGCTTTTTTTTTTTTTTTTGCTTCAAAATCTCGCCCCCCATTCACTACCATTATAAAGCTTTGAGGAGCAAGGATATTTTTAAAAATATCTCCGATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582584 lncRNA upstream 97 2175576 ~ 2175836 (+) True G508033
TU582582 lncRNA upstream 3125 2172566 ~ 2172808 (+) True G508031
TU582481 lncRNA upstream 252608 1910343 ~ 1923325 (+) True G507939
TU582452 lncRNA upstream 354290 1819526 ~ 1821643 (+) True G507915
TU582450 lncRNA upstream 356480 1817797 ~ 1819453 (+) True G507913
TU582506 lncRNA downstream 2004 2178156 ~ 2179980 (+) False G507961
TU582505 lncRNA downstream 2070 2178222 ~ 2179980 (+) True G507961
TU582525 lncRNA downstream 4020 2180172 ~ 2180438 (+) True G507974
TU582514 lncRNA downstream 11134 2187286 ~ 2190894 (+) True G507966
TU582589 lncRNA downstream 19686 2195838 ~ 2196343 (+) True G508038
CI01000350_02100526_02105123.mRNA mRNA upstream 70668 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02051537_02098878.mRNA mRNA upstream 76915 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_01860321_01869386.mRNA mRNA upstream 305814 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_01748423_01750654.mRNA mRNA upstream 424877 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_01625265_01628425.mRNA mRNA upstream 547309 1625143 ~ 1628624 (+) True CI01000350_01625265_01628425
CI01000350_02225123_02231703.mRNA mRNA downstream 48895 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02326331_02328418.mRNA mRNA downstream 150179 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02342610_02352568.mRNA mRNA downstream 166458 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02387606_02388868.mRNA mRNA downstream 211408 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02502767_02507641.mRNA mRNA downstream 325874 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
TU582221 other upstream 656105 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 713696 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 713918 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 719899 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 720031 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 211471 2390180 ~ 2390292 (+) True G507957

Expression Profile