RNA id: TCONS_00020688


Basic Information

Item Value
RNA id TCONS_00020688
length 462
lncRNA type lincRNA
GC content 0.36
exon number 4
gene id XLOC_010552
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 15779159 ~ 15780407 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCCATAGTTTTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATGTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAACACAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000167639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020687 lncRNA downstream 70015 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 1335770 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00021791 lncRNA downstream 1335962 14436274 ~ 14443197 (-) True XLOC_010545
TCONS_00020679 lncRNA downstream 1340275 14431515 ~ 14438884 (-) False XLOC_010545
TCONS_00020678 lncRNA downstream 1345502 14431515 ~ 14433657 (-) False XLOC_010545
TCONS_00021792 lncRNA upstream 5830 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00022134 lncRNA upstream 486149 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 684787 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020703 lncRNA upstream 746568 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 805688 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020686 mRNA downstream 391700 15369634 ~ 15387459 (-) True XLOC_010550
TCONS_00020685 mRNA downstream 516060 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020684 mRNA downstream 681646 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020683 mRNA downstream 1191827 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020682 mRNA downstream 1226960 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020690 mRNA upstream 162480 15942887 ~ 15988320 (-) True XLOC_010555
TCONS_00020691 mRNA upstream 261236 16041643 ~ 16120941 (-) True XLOC_010556
TCONS_00020692 mRNA upstream 368354 16148761 ~ 16152199 (-) True XLOC_010557
TCONS_00020693 mRNA upstream 384622 16165029 ~ 16182319 (-) True XLOC_010558
TCONS_00020694 mRNA upstream 429801 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020674 other downstream 1382460 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 1820274 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 1961219 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2107940 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 2236699 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020689 other upstream 33099 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 793007 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 897301 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 1339657 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 1341591 17121998 ~ 17129466 (-) False XLOC_010577

Expression Profile

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