RNA id: TCONS_00021792


Basic Information

Item Value
RNA id TCONS_00021792
length 568
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id XLOC_010553
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 15786237 ~ 15786804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTCAAAGCAGGCCGGCCAGCCGCCGCTGAATACCGCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTCTGGAACCTGGGGCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCACAAGACGCACGAAAGCGAAATCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCATAGTTCCGACCGTAAACAATGCCGACCCGCGATCCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCGTGCGGGAAACCATGAGTCTTTGGGTTCTGGGGGGAATATGGTTGCAAGGCTGAAACTTGAAGAAATTGACGGAAGGGCAGCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACAGGAAACCTCACCCGGCCTGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCATTCTAAGTTAGTGGACTGGTTCATTCCGATAACGAACGAGACTCCGGCATG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020688 lncRNA downstream 5830 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 77093 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 1342848 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00021791 lncRNA downstream 1343040 14436274 ~ 14443197 (-) True XLOC_010545
TCONS_00020679 lncRNA downstream 1347353 14431515 ~ 14438884 (-) False XLOC_010545
TCONS_00022134 lncRNA upstream 479752 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 678390 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020703 lncRNA upstream 740171 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 799291 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 806545 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020686 mRNA downstream 398778 15369634 ~ 15387459 (-) True XLOC_010550
TCONS_00020685 mRNA downstream 523138 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020684 mRNA downstream 688724 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020683 mRNA downstream 1198905 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020682 mRNA downstream 1234038 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020690 mRNA upstream 156083 15942887 ~ 15988320 (-) True XLOC_010555
TCONS_00020691 mRNA upstream 254839 16041643 ~ 16120941 (-) True XLOC_010556
TCONS_00020692 mRNA upstream 361957 16148761 ~ 16152199 (-) True XLOC_010557
TCONS_00020693 mRNA upstream 378225 16165029 ~ 16182319 (-) True XLOC_010558
TCONS_00020694 mRNA upstream 423404 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020674 other downstream 1389538 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 1827352 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 1968297 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2115018 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 2243777 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020689 other upstream 26702 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 786610 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 890904 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 1333260 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 1335194 17121998 ~ 17129466 (-) False XLOC_010577

Expression Profile

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