RNA id: TU582617


Basic Information

Item Value
RNA id TU582617
length 232
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G508066
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2237362 ~ 2237593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAACAGTTGTTTCTGGTTGTATTTGGTCATTATAACATTTTTTGACAGCTAGTCGGCCACCAAAGTTAGACTATTAAAAGCTATCGACAACGCAAGTTAACTATGAAAACTGAGACTTTATAAGAAATTATATAAAGTTTACATGATTCTTATAAAGTATGAGATTATATTATTAAAATCGATGTGCACATTTCATGTACATTAAATTATATTACATCAGGGACATCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582589 lncRNA upstream 41019 2195838 ~ 2196343 (+) True G508038
TU582514 lncRNA upstream 46468 2187286 ~ 2190894 (+) True G507966
TU582525 lncRNA upstream 56924 2180172 ~ 2180438 (+) True G507974
TU582506 lncRNA upstream 57382 2178156 ~ 2179980 (+) False G507961
TU582505 lncRNA upstream 57382 2178222 ~ 2179980 (+) True G507961
TU582496 lncRNA downstream 2932 2240525 ~ 2242441 (+) True G507953
TU582632 lncRNA downstream 33442 2271035 ~ 2271269 (+) True G508080
TU582634 lncRNA downstream 41667 2279260 ~ 2279473 (+) True G508082
TU582635 lncRNA downstream 42066 2279659 ~ 2279865 (+) True G508083
TU582638 lncRNA downstream 59002 2296595 ~ 2296908 (+) True G508086
CI01000350_02225123_02231703.mRNA mRNA upstream 5302 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02100526_02105123.mRNA mRNA upstream 132097 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02051537_02098878.mRNA mRNA upstream 138344 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_01860321_01869386.mRNA mRNA upstream 367243 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_01748423_01750654.mRNA mRNA upstream 486306 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_02326331_02328418.mRNA mRNA downstream 88738 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02342610_02352568.mRNA mRNA downstream 105017 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02387606_02388868.mRNA mRNA downstream 149967 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02502767_02507641.mRNA mRNA downstream 264433 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
CI01000350_02564422_02569042.mRNA mRNA downstream 326829 2564422 ~ 2570021 (+) True CI01000350_02564422_02569042
TU582221 other upstream 717534 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 775125 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 775347 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 781328 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 781460 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 150030 2390180 ~ 2390292 (+) True G507957

Expression Profile