RNA id: TU582634


Basic Information

Item Value
RNA id TU582634
length 214
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G508082
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2279260 ~ 2279473 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAACACAGGCAGAATAAATGTATGTGTTTATAAAACCATTCTTATGATTCTATAAACAACTTATACAGAAATGTGTTTTCACATACATTTTGGAATGGACACAATTTTGTCTGATAAATCGTCCGATATCACTCTGCAGGGTACATGCTACTGTTTAGCAAACAAACCTGAGGCTCTCACTATGATGTGACAATATAAACACTGCTGAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582632 lncRNA upstream 7991 2271035 ~ 2271269 (+) True G508080
TU582496 lncRNA upstream 36819 2240525 ~ 2242441 (+) True G507953
TU582617 lncRNA upstream 41667 2237362 ~ 2237593 (+) True G508066
TU582589 lncRNA upstream 82917 2195838 ~ 2196343 (+) True G508038
TU582514 lncRNA upstream 88366 2187286 ~ 2190894 (+) True G507966
TU582635 lncRNA downstream 186 2279659 ~ 2279865 (+) True G508083
TU582638 lncRNA downstream 17122 2296595 ~ 2296908 (+) True G508086
TU582639 lncRNA downstream 18543 2298016 ~ 2298493 (+) True G508087
TU582641 lncRNA downstream 20448 2299921 ~ 2300128 (+) True G508089
TU582642 lncRNA downstream 21864 2301337 ~ 2301575 (+) True G508090
CI01000350_02225123_02231703.mRNA mRNA upstream 47200 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02100526_02105123.mRNA mRNA upstream 173995 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02051537_02098878.mRNA mRNA upstream 180242 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_01860321_01869386.mRNA mRNA upstream 409141 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_01748423_01750654.mRNA mRNA upstream 528204 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_02326331_02328418.mRNA mRNA downstream 46858 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02342610_02352568.mRNA mRNA downstream 63137 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02387606_02388868.mRNA mRNA downstream 108087 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02502767_02507641.mRNA mRNA downstream 222553 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
CI01000350_02564422_02569042.mRNA mRNA downstream 284949 2564422 ~ 2570021 (+) True CI01000350_02564422_02569042
TU582221 other upstream 759432 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 817023 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 817245 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 823226 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 823358 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 108150 2390180 ~ 2390292 (+) True G507957

Expression Profile