RNA id: TU582642


Basic Information

Item Value
RNA id TU582642
length 239
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G508090
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2301337 ~ 2301575 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCACACAGACAAAAAGCAAAATTGTGATTGGTGCTGAACAAGAACCAATCACTGCCTGTGTTACAGGTCTTCTCAAGAGGTAATGAGTCACGAGTCTGACCACTCACGGAACTCGGAGGGGGTCACATGACCTGCTATGAAGTTTTTAGTAATTCTGTGGAAAGCCTGCACGCTGTTTGAAACCCTAAAGAGTTGACTAACCATTCCACAACCACACATACACACACACACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582641 lncRNA upstream 1209 2299921 ~ 2300128 (+) True G508089
TU582639 lncRNA upstream 2844 2298016 ~ 2298493 (+) True G508087
TU582638 lncRNA upstream 4429 2296595 ~ 2296908 (+) True G508086
TU582635 lncRNA upstream 21472 2279659 ~ 2279865 (+) True G508083
TU582634 lncRNA upstream 21864 2279260 ~ 2279473 (+) True G508082
TU582509 lncRNA downstream 29732 2331307 ~ 2332063 (+) False G507963
TU582510 lncRNA downstream 29732 2331307 ~ 2332027 (+) True G507963
TU582651 lncRNA downstream 66288 2367863 ~ 2368286 (+) True G508099
TU582697 lncRNA downstream 153487 2455062 ~ 2455567 (+) True G508145
TU582710 lncRNA downstream 183161 2484736 ~ 2485005 (+) True G508158
CI01000350_02225123_02231703.mRNA mRNA upstream 69277 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02100526_02105123.mRNA mRNA upstream 196072 2100526 ~ 2105265 (+) True CI01000350_02100526_02105123
CI01000350_02051537_02098878.mRNA mRNA upstream 202319 2051537 ~ 2099018 (+) True CI01000350_02051537_02098878
CI01000350_01860321_01869386.mRNA mRNA upstream 431218 1859899 ~ 1870119 (+) True CI01000350_01860321_01869386
CI01000350_01748423_01750654.mRNA mRNA upstream 550281 1748423 ~ 1751056 (+) True CI01000350_01748423_01750654
CI01000350_02326331_02328418.mRNA mRNA downstream 24756 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02342610_02352568.mRNA mRNA downstream 41035 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02387606_02388868.mRNA mRNA downstream 85985 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02502767_02507641.mRNA mRNA downstream 200451 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
CI01000350_02564422_02569042.mRNA mRNA downstream 262847 2564422 ~ 2570021 (+) True CI01000350_02564422_02569042
TU582221 other upstream 781509 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 839100 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 839322 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 845303 1455782 ~ 1456034 (+) True G507676
TU582196 other upstream 845435 1455782 ~ 1455902 (+) False G507676
TU582500 other downstream 86048 2390180 ~ 2390292 (+) True G507957

Expression Profile