RNA id: TU582724


Basic Information

Item Value
RNA id TU582724
length 417
lncRNA type intronic
GC content 0.38
exon number 1
gene id G508172
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2518412 ~ 2518828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAAGCTACTTTTTTACTCTGACAAGTAAATGACCAACTTAGTTGTCCAAAGGACAAGCTCAATACAAGGCTTAATGTCGAGCACTGTATTTTGTATTTATATTCTCTGCTTTAATGGTAGCATCACTCTTATATTTGATACTGACACAAAGGAGAAGGCACAGGCCTAAGATTTTATTGTCATCAGATGTAGCTTTGCACACTACCAGCATCTATAGAATGATTTTGATCAGCATTTTATTGTTCATAGCAGAGGGCTCTCTCAACTTGTTATATTTTAGTTTGTCAAATGATACGATTTTGTAGTCTGTGCATACAGATGCACCCCTCAGAAGCCTGAAACCACAGAGCCCCCCCATATAACAAATCCCAATTTAACCCCTGGATATAACCACAGTGGGACTACTAATGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582710 lncRNA upstream 33407 2484736 ~ 2485005 (+) True G508158
TU582697 lncRNA upstream 62845 2455062 ~ 2455567 (+) True G508145
TU582651 lncRNA upstream 150126 2367863 ~ 2368286 (+) True G508099
TU582509 lncRNA upstream 186349 2331307 ~ 2332063 (+) False G507963
TU582510 lncRNA upstream 186385 2331307 ~ 2332027 (+) True G507963
TU582738 lncRNA downstream 36351 2555179 ~ 2555413 (+) True G508182
TU582689 lncRNA downstream 37492 2556320 ~ 2556577 (+) True G508137
CI01000350_02502767_02507641.mRNA mRNA upstream 10771 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
CI01000350_02387606_02388868.mRNA mRNA upstream 129510 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02342610_02352568.mRNA mRNA upstream 165106 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02326331_02328418.mRNA mRNA upstream 189487 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02225123_02231703.mRNA mRNA upstream 286352 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02564422_02569042.mRNA mRNA downstream 45594 2564422 ~ 2570021 (+) True CI01000350_02564422_02569042
TU582500 other upstream 128120 2390180 ~ 2390292 (+) True G507957
TU582221 other upstream 998584 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 1056175 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 1056397 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 1062378 1455782 ~ 1456034 (+) True G507676

Expression Profile