RNA id: TU582689


Basic Information

Item Value
RNA id TU582689
length 258
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G508137
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 2556320 ~ 2556577 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAAGTATGACTGGAGCTCTGAACTTTCCCATTGATCACAATGTCAGATTGATACTGGCCACTGTCTTGGCTGCTCAATTTTTGTATTGTGAGCTCTCCTGTTTCAAAATCAACAACTACACGGCTTTTGAATGAGCCGTACTCCACCACCTCACTCCCGTCATACTCCAGAACCTTGTTCTCATTGTGTTTCCACAGTATTTCTTCAGGCTTTCCACGGATTCTTGGAGTAAGTGTGATCTTGTTTCCAATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582738 lncRNA upstream 907 2555179 ~ 2555413 (+) True G508182
TU582724 lncRNA upstream 37492 2518412 ~ 2518828 (+) True G508172
TU582710 lncRNA upstream 71315 2484736 ~ 2485005 (+) True G508158
TU582697 lncRNA upstream 100753 2455062 ~ 2455567 (+) True G508145
TU582651 lncRNA upstream 188034 2367863 ~ 2368286 (+) True G508099
CI01000350_02502767_02507641.mRNA mRNA upstream 48679 2502026 ~ 2507641 (+) True CI01000350_02502767_02507641
CI01000350_02387606_02388868.mRNA mRNA upstream 167418 2387560 ~ 2388902 (+) False CI01000350_02387606_02388868
CI01000350_02342610_02352568.mRNA mRNA upstream 203014 2342610 ~ 2353306 (+) True CI01000350_02342610_02352568
CI01000350_02326331_02328418.mRNA mRNA upstream 227395 2326331 ~ 2328925 (+) True CI01000350_02326331_02328418
CI01000350_02225123_02231703.mRNA mRNA upstream 324260 2225047 ~ 2232060 (+) True CI01000350_02225123_02231703
CI01000350_02564422_02569042.mRNA mRNA downstream 7845 2564422 ~ 2570021 (+) True CI01000350_02564422_02569042
TU582500 other upstream 166028 2390180 ~ 2390292 (+) True G507957
TU582221 other upstream 1036492 1515709 ~ 1519828 (+) True G507699
TU582205 other upstream 1094083 1461119 ~ 1462237 (+) True CI01000350_01454880_01462490
TU582206 other upstream 1094305 1459826 ~ 1462015 (+) False CI01000350_01454880_01462490
TU582197 other upstream 1100286 1455782 ~ 1456034 (+) True G507676

Expression Profile