RNA id: TCONS_00022134


Basic Information

Item Value
RNA id TCONS_00022134
length 3673
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_010562
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16266556 ~ 16270435 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTTCGATAAGGTCAAAGTAGGGAGGCATTTTTTTCTGCTTGGCTTTATCCCTCCACACAAATGGATCCGAAAATTCTTTCAGACTGAGAAGTGGTCGCTGAACCTCTTGAATTTGATGGAAAGACTCCTTAGCATCTTTCAAAGGCCTTGAGCTCTCATCAAAACACTCCCTTTTACTCAGGCCTGCCTCTGCCTCATTATCTGATTCAGATTCAAACTCTTGGCGTCTCTTCTTAGGTGGGCCCCTTCCTCGATGAGGCTTTTGGTTGTCATCTCTAGGTGCTTCCGAGATGTTCTGACTTTCTGTTGTGAAGCTGCAGTTGCTACTTATCTCAGGCGCTTGAACAAATGGGGATGGTCCTGGTAGGCCAGCAGATAATAATGATGCTTGTTTAATTCCCAAAATCCTTCCCTCACGGTCATCATCATGGTCATTAGTAAGAGAGTCTGGATGAATCTGGTGAACTAAATCATGATACTGAAAAGGCACATGCGTGTTGACTGTCCTGCTGGTTTTAGAGATGGCAGGCTGGGCCCATGGATCTTCTCTGTGAACACTATCAAACAGTGGCTGAGGTGTACTATAACTGCTGTCCGGTTGCTGAAATGTGCTGCTGGGCTGTTCTGACTGGTTGAAGTCCCAGACCAAGCTGTCACCCCTCCCAACACTGAAGTCACCTTTCCTTCCGTTCCAGCTATCTGGTCTCCCATGGTACTGATGGTGATCCGTTTCAGGTTTCTCGCAAGTCTTCTCAAAATTCTGAACATATTCTTGGTTTATCTGGCCAGAGATATTTGGTCTTTCTTGAGCACTCCAGTTCTTGTCCACATGGGCACTCATGACCTCTAAATGGCTGGTGCTGTCAACCATGTTGCTCTGCGATTGATAGGAGACACCTTTAACATTTGGACTTTGACATGCAGCTTGTGCACTGCCCTTATAAAGTGCAGCTGATGACTCTTTGAGTGTTGACTGATTGTTAAATCCGTAAGGAAATTCTTTATTAATGCTTTCATGTGTATCAGTTTGCTGATTCCCAGAAAACAACGAGGAAGCAGGGGCGGGTTCAGCCTTGTCATTTGTTTCAAGAGCAATGGTTGAATTTTTTGGCACAACCACTACAGAGTGCAACCTCTTTAGGGAGACCCGTCCATCATCTGAATCAGAATCTGATTCTTCACTCTCACTATCATCACTGTGACATTTTCCATCATGATTTAAGGAATCAGGGTCTTGAATTTCAGGTTTAGTTTTGTCTACATTGACTTTCTCTTTACTAGGCTGAAAATCACTAACAACCAGGGCACTTGTTGATTGAGGAATTTCAACAGTTTTTTGAAGTTCATCATGGGTACCTTTAGTTCCAAAATTAGATGTGAAAGAACTTATTTCTTGATGAGATTCAGCTGCGGTGGTGTCTCTTGCATGAACTTCTACCGACTTTTCAGATGGTACTTCTGGGTCCAGTTTCTGACTACAATTATCAGGGGTAGTATCACTGAACTCTATTTTCTGAGCTAACATTACTTTTTTCACATCTGGATTCACTAATTTCGCAGGGCTTTGATATTCTGAAGTGACTTGACCAACAATGTCCCATCTAGATTTTTTAGCACTAGCATCCTTTTTGGAAATCCCAGTATTAGGTTGTTCAGGACTCCCAATATTCTGTTCAGAATCCTTTTCACATGGTTGAACAGTCAGTGTGACAGGCGTACTGATTTGACTAATGATTAGTGATGACTCATCCGACTTAGTGTTTAAAATCAAGCTTCCTTCAGGTGGTAATTCTTTCACAGAAAGAGAGTCTGTCAATGATCCCATAGTATGTTCACTGGGAGCGGGGCCTACACAAATTGATTCAGTCTGTCCTACTGTCAGAACTTCACTTTGGATTGGAACTGTGACTTTCATTCCAGGTTCATCAACCTCAGTGGGACTTCTAACTTCAAGTTTTCCACTTGTTATGGAAATAGATTCCGTCAATCTTTCAgttgtttttttactttcaggAACATTTGTGCACTTTTCTAAACTACTAAGATCTTGGTTTGAAGGTTGATGctctgcttttttatttgtttcacacAAATTAACTTTGTGGGTAGCTTCATGCATCTGTTGAGAACTGTTTTTAGATTTAGGCGGAGTACACTGATCATCAATGTTGCTGCTTTCCTTCTGAGAAGTAACTGTAACAAAGACTAATTGCGAGTCCTTTGCGTTAGTATTTAATCTGTCTGTTGATTGTCTTTCTGTTCCAGTACcaatattaaaactattgtgatcCACTAAATCGTTTTTTCTGGAAGATGAAGTCCCAGACCTAGGTGACCTGTCTGATCCTTGTGACTGACGTTTTCTTCTGTGCTCCTCATCAGAGTCAGAGCTGGTTTTATGGATCTTTTTCTCAGATGTTCGGGATGAGTCTTTTTGTGAGCTAGAGTAAGTGGATGATCGGCTTGAGTCACTACCACGAGTCCTTGTTCGACGGTGGTCATCCTCCGAGTCAGAGCTGTCACGAGACCTGCCATCAGTTCGAGAACGTGAGCTTCTCCTTTCCCGATGAGGAGAACTTCTATGGAACCTCCGCTCAGATTCATGATAATGTGACCTATCTGTCCTTGACTGTCTCTCACTTCTTGATCTTTCAGATCTGGAATAAGAACTAGTTCGAGAGCCTCGAGATCTAGACCGTGACCGACTTTTGGTCCTTCTTCTATCTCTGTCAGATCGAGAAGATCTTGAAGACATGTGCCTAGAGTCACGATCAGACTTTGAATGCCTTATCCCCTTTTCTTCATCTTTCCTATCAGTCCTTGATTTGTCTAACTCTGTTTTGGAATTGGATGATCTTTTCACTTCATTACTATGGCTttctgattttgttttgtttctgcgGTCATTAGATTTCTGGCTAGATGATGTTCTAGTTGATTGCCCATCAGTTTCTAAACCTGCAAGCTtgctgtctgaacactgttttGATTTTCTGCTTTCCTCATGCTCAGAAATAATGGAAGAATCTGTATCTTCCTTCCCAATATGGGAAGAATCAGGACCTTTAAGGCATGAGGCTATTTTCTCCTGAGGATTTTCCTCTTTGCTAACCTTTTCAGAAGAACCATCAACAACAGAGTTCTTGTGAGATTGCTGCAAGGAGTTTTCAGTTTCAACCTTTGCGGAAGATGTAATTTTATCAGATGGGACAACTGGCTCTGATATCTCTGCTGAGGCAGTGCTGACCGTGGATTTATCCCCAACAACTGTACTGCTGAGAATCTGTTTCTTAAAATGCATCTTTCCAAGAACATGCCTTGATCTGAGAGAAAAGGATACTGTGGGGGCTGTTTGGGTCTCCCCAACTGCTGGAGTATTTGTGTCAACATTCTTAGTTTCATAGGTTTGTCCTGCTTGAACGGAAACAGGTACAGGTCCAGCTTGTGATGTAGAAGAATGTTCACTTGCAGATTTCTCAGGGCTTGGTGGTGGTAGAAACACATTTTGACGTGGTTTCTTTGTCTGCGTTAAGCTGAAGGAGACCTTCTGTCGACCCTGTTCCTCAAGGTTTACTTTAGTCTTGTTTCCTTTCATCAGAAGATGGTTTGTCAATACGACCCTAGGTGCAAGGCCTTTGAATATGACTTGCTTAGGGAAGTTTTCAACCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021792 lncRNA downstream 479752 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 486149 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 557412 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020680 lncRNA downstream 1823167 14431515 ~ 14443389 (-) False XLOC_010545
TCONS_00021791 lncRNA downstream 1823359 14436274 ~ 14443197 (-) True XLOC_010545
TCONS_00020702 lncRNA upstream 194759 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020703 lncRNA upstream 256540 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00022135 lncRNA upstream 315660 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 322914 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020715 lncRNA upstream 395419 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020698 mRNA downstream 28696 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020697 mRNA downstream 28712 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020695 mRNA downstream 40376 16222394 ~ 16226180 (-) False XLOC_010560
TCONS_00020696 mRNA downstream 41296 16223676 ~ 16225260 (-) True XLOC_010560
TCONS_00020694 mRNA downstream 53941 16210208 ~ 16212615 (-) True XLOC_010559
TCONS_00020699 mRNA upstream 47593 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020700 mRNA upstream 87913 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA upstream 87945 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020704 mRNA upstream 284252 16554687 ~ 16590780 (-) False XLOC_010566
TCONS_00020705 mRNA upstream 286091 16556526 ~ 16590489 (-) False XLOC_010566
TCONS_00020689 other downstream 452055 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 1869857 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2307671 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2448616 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2595337 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020706 other upstream 302979 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 407273 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 849629 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 851563 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 974473 17244908 ~ 17245047 (-) True XLOC_010582

Expression Profile

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