RNA id: TCONS_00020703


Basic Information

Item Value
RNA id TCONS_00020703
length 407
lncRNA type antisense
GC content 0.43
exon number 2
gene id XLOC_010565
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16526975 ~ 16529972 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAGCGCCAAGTTTCCCCAATGTCTTTACAGAAACAACATTTAATACTTTACTCACTTGCAACTGTCGATCTCGTAGTGCCTTTAACCTCTCCTTTCTTTTCAATGCTTGCTCCTGTAAAGAACCGGCAGGCTTCTCCATGATGAAAATAAAGCATGGACAGTAGGATCGATGAATCTGTACTCGATAATGTATGATGTCTGTTTAGAGGTTGCTAGTAGAGCACCGAAAACATCAATTTTAAAGGTTTTGTGCAGTCTATGGGGTCAACTGTCTTTCCTGCTGTCAATGGACCGGTCCGGTGAAATGACAAAGAAACCTGATTCTGATTGGTCCTCACGCATGCATCTGAAATGCTGACTGGCttacagaaagaaccttataaagCCAAGCGAGAGTTCGACTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157626

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020702 lncRNA downstream 56133 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00022134 lncRNA downstream 256540 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00021792 lncRNA downstream 740171 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 746568 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020687 lncRNA downstream 817831 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00022135 lncRNA upstream 56123 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020707 lncRNA upstream 63377 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020715 lncRNA upstream 135882 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00022136 lncRNA upstream 485216 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020732 lncRNA upstream 664101 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020700 mRNA downstream 4962 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA downstream 45929 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020699 mRNA downstream 185948 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020698 mRNA downstream 289115 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020697 mRNA downstream 289131 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020704 mRNA upstream 24715 16554687 ~ 16590780 (-) False XLOC_010566
TCONS_00020705 mRNA upstream 26554 16556526 ~ 16590489 (-) False XLOC_010566
TCONS_00020710 mRNA upstream 75545 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020709 mRNA upstream 75545 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020708 mRNA upstream 75545 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020689 other downstream 712474 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2130276 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2568090 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2709035 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 2855756 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020706 other upstream 43442 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 147736 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 590092 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 592026 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 714936 17244908 ~ 17245047 (-) True XLOC_010582