RNA id: TCONS_00022135


Basic Information

Item Value
RNA id TCONS_00022135
length 691
lncRNA type sense_over
GC content 0.53
exon number 4
gene id XLOC_010566
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16554687 ~ 16590780 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGAAGCCAAAGCGTGTAATTCCAGCCGCTGTGATTGGAACATCCGCACATAAGGAAAGATGTATGTCTTCTATTCTCTGCTGGTCTACATCTTTTACACTGTCTTCaaaaaagaagaggaggaggaggaggcagcGCTCGAGGGGGCGTCTGGAGAATCCCCTGAGGAGCCTGGCCATGTTTCCATGGAAACAGTGAGCAAGGGGAAGGGTAGCCACACACCCAGGTTGGGCAAAAGGGGGTTTGCAAGACTGGCTGATTCAAGCAGCAGCAGTGATAGTGATGGGACGTCTGTtagtgatgaagaggaggagttcGACGAAGGTCATGGATTACCTGCTAAAACACCATTAACAGCTTTTCTGTCATTCAAGCAAGAGGCGGAAAAGCGAAGAGTCACTACTTCCCCTGCAGAACCAAGTGAAAAGGTGTCTGAGTCTCCATTGCTGTCTGTGATGTCACACCTCCTGAGCTTCCTGGAGCAGTATTCGCACCTGCAACAGCTGCAGCAGCAGGCGGATCAGTACCGTCTGCAGCTGCGCAGACACCGAGCACAGCACCGGAGAAAGATGAAGGCCCTGCGTGCCTCCTACCGCCAGCGTCTTCGAGACAAAAACAGTGTGATCAACAGCCTGGAGGAAGTCctcgctcagcaacagagcacaTCACCCGAATCTGAAGGTGAGACC

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020703 lncRNA downstream 56123 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020702 lncRNA downstream 115253 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00022134 lncRNA downstream 315660 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00021792 lncRNA downstream 799291 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020688 lncRNA downstream 805688 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00020707 lncRNA upstream 2881 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00020715 lncRNA upstream 75386 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00022136 lncRNA upstream 424720 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020732 lncRNA upstream 603605 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 644814 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00020700 mRNA downstream 64082 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA downstream 105049 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020699 mRNA downstream 245068 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020698 mRNA downstream 348235 16232621 ~ 16237860 (-) True XLOC_010561
TCONS_00020697 mRNA downstream 348251 16232621 ~ 16237844 (-) False XLOC_010561
TCONS_00020710 mRNA upstream 15049 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020709 mRNA upstream 15049 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020708 mRNA upstream 15049 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020711 mRNA upstream 16202 16606670 ~ 16619854 (-) True XLOC_010569
TCONS_00020712 mRNA upstream 30774 16621242 ~ 16649764 (-) False XLOC_010570
TCONS_00020706 other downstream 12565 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 771594 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2189396 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2627210 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2768155 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020716 other upstream 87240 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 529596 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 531530 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 654440 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 656754 17247222 ~ 17247363 (-) True XLOC_010583

Expression Profile

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