RNA id: TCONS_00020707


Basic Information

Item Value
RNA id TCONS_00020707
length 5711
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id XLOC_010568
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16593349 ~ 16604080 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACTGTCTTGTTCTTCACTTTGTTTAACAATACTGTAATTTTTTAGCAATAAACGCATAAAATATTTGTCATGCCAGTGCCAAAGCGCTTACACTGGAAACTGTGAAAAAGAGATAGTTTTATATAAGTATACTAACAAGTGTAGGCTACATCATTCTCATTTATCAAAATATTGGTCACCAGTCTGTAACCTTTGGTGCTGTTCCTCTCTCGTCCTCTAGAGGGCAGAACACACTCCACCACCAGCTAAACGCAGATCTGCACACACTTCCTGTGATTGCTCGAGTTGTTGATAAACAGCGAGCACATGCTGGAAACTGTTTCTGGCATTTTGTCTTTGAACAGATCGACTGATACTTGTATTTAACTCCTAAACCAGTAGTGTGACGATCTGTAGTCTGCCATGTTTCTGCAATTACACGCTGAACAATGAGACTTCTCTGCTCAGGACACTGATGGATTTTATAAAAGAGTTTACTACAGCTGTGACGCACATCATTTTGTCTGTCTCATCACTCAATGCTGCTTATTGGCTGTTCAAGaATCACAGAGCATCCTCATTGGGCTTCCTCCTGATCGGCTGTTCCTCCATTCTTTCATTCTTATCTCCCACTAACCATAACATCACGAATGATCTGAAATGGGCAGGTGAATCACTTGGACCTGTGTTTTTTACATTTGACCTTCTGTGGCTTAGTGACGACCACATCACAGCCCGCATCCTCCTGATTGGCTCCAGTTTTTTCATAATACTGTCTGATTGGCTGTCGTCAGATGGATTGGTCATTATGTCCCGCTGCCTGGCCTTTTCTACCCTTTCCTGTTCGCTGACAGTGTGTGCTTTTGCTGAAAATGTTGCAGGGGCAGTGGGAAGTGTTGCCCTCAGTCTCCCTTTATTAGTTTCCCCAAGGAACAGATCTGGAGCTTTGGGTTTCCTTATGTTGCCTACTGAAGGACTTCTCAGAGGGATGCTTAATGTCATAATGGCATTTGGTTGCTGGACTACCAGAAAAGCCCTTAATAAATTCCTGATTGATTTGAAAAGCTGGGACTGACTTGGGAGGGAAGAAATGGTTTCCAAATACAATAGACCATTTGTTCTCAGGTTATTAGCATATATATGCACTGCTAATGTGGATTGTTGCATGTAAAGGCCTTCTGTCATAATAAGCTAATGTTGCAGTACTGTATGTTATACTACACAAAGTAGAGTTTGCTTATAACCTATTAAATCCATTACAGTGACACTGAAGGCTAGTAAAAACCTTTAGCAATGAATAAATAGTTCAGCATCATGAACAATACAGCTCTTTGTAAAGAAAGAATGGGACTCTGTTTGGACCAGTGTTGCCATGACCGCATATTATAATTTGGTTGCCCATGGCAAATTTGCATACTACTTTAAATTCGATAGTTTCCTTAAATGTCAAATTGCAACATACAGTAACCCTGTTTATGCAGTTTTGGATTGATtatcacaaaaataataaatacatcctgggtacactcttaaaaataaaggttgttTATTGGTAGTTATATTTCAatgaaaaacattaaacattcatGGAAGGTTTCTATTACATAAAAGGTTCTTTATGGGGAATGTTTTTTTGATACAAAAATGGTCCTTGTTACATTCCCTTAATTCTGTCTAGGGGAAAACAGGTACGCAGTAGAATGTTagtggagtttgtgtgtgtgtcagcaatgAGGTCCCATGAGGATCTTCCCAAAAGACTAAACGAAAGAAATTACGCAGAGGAATACTCacaatgcaaattaaataaagaataatcaGATATTTATTCAACGATTAAGGGAGGGTTTCAAGAGGGACTTcaagcaaaaacaacaaacaaaaagtttTCAAACTGATAGAAAGGGAAGAACTAAATAATCtatcaaagaaaagaaaaatacatcaaaataccCTCACTCCCTTACTAACATAAACAGGAGAAAAAACTGTTATAAACTGAAATATGGCACCCCCTCTCTACTAACCTGATGccaagttaaaaaaacaaaaacaaagtaaagGGTCAATAATGAAGTAGGATTGAAAAATCTAAAGGAAACTCACAAAACTACATTAGATTGACAACAGCTTTAACAGaaattaaagggtcatgacaccccgcactttcggttcaggtctactaGTATTTTTTCAAAAGATTCATCATGATGGGTtgtgttgtcagttagctcacaaaatgagacgcaAACCGCAAGGAGACGCATGACTTtacagtttacaaagttaaaatgcaaagaaataaacagtaattatatGCCCTGCtagatttgttatttgttatttgatatacacacaaccacaatttatatcattattaagATAATCATGTTAAtttttccctcaatccccaggtctgaatgtagactcagtgcagcaggtctctttccctgtctattttaaccattagccctgttggtaatctggaggatttaggcgaacacagcagcacggcaatgtgtctaaatgtgaacgaactcctgataaaagacaacgtctgcCATTCTCAAATTCTTTTACTGCTcttctgacaaaaatgcttgcagcacacacacagctttgctgtatcggccctgatagcattgcggggaaaaacatgcaacaaaccccatggatcatggaaacaaacacacacgacccttcatgaacggcaAAAGAATGAAGAATAATTAAgcagcaggctcttctcataggataagaaaactccgctataaataataatgagaaacagaCGGGTCATCTTTACACTTGCAGTTTTTTACTACATCgccaattttgatcccgccccaaaaattattttaaacctggaagctgaaattagcagaaagaagctcaaaattatccagtttcccccacaattaatgctaacattgtcttaactgatgctcaacacacacaagtctgttaacatctcaaaaaaagtactcgagggttttgtgaatctttaaacaaatgaagGCTCCTAAACAACACATAATGCTTTAAAggacaaaaaatgtaaagcctcaCAAAAGAGCcttcacacacacagaacacactaACTGCGTCCAaaactactcagtaggtactgtattttaatttaaacatactacttggCCATTTgaaaagtacgctctatacagtatgaatgtgagcagcatgaatggaatttggacgtactacaactatattttgtcatggtcacatgacctagtTGCGTctcttcactcccattcataaattctctctaGGGGAcacactagagtttaagcttGTGAAATTCAtacaagatgattagacaattaaaaaagtgagcgattggtccatatttttaatttctgtccagagagggcatgttttgatcctcgattggtatcacgcagtcaagtgatgcgattttgcaggtcagagttcaccaagcttaaactttccaaCGTAAAGTTCTGTGAAACTTGACGCACgagcttgcgtgtgtgtgtgtgttaaatacctttttttaatattttctttaaaaaagttgaAACGTTACTTGTTCAATTctgaatcaaaatattaaaatactttcTGAAATCTGTGTATTTGTGTCAGGAGGCaaagaaaattaattttaatctgttcAAATAAAGCACTatcaacatttttctttttaaactgaaaaacgtAAAAcctaaagacattttttaaatcttgacatttttttaatcaagCCAATGTTTTTGATTACGGCTGTGCATCTGTATTGCATTGAGTCAACATCTGGCACACAGAAACATATATTCCCACCCAAGATGATTTATGTATGTCACACATTTCTGGTGAATTTTTGTCTTTTGCTTCAGAAACTTCATTTTAATATCAGCCCATGAACTTTCAATTGGTCAAGGGATTGAGCTGGCCACTCCATTGCCTAAATCCTTTTTGCCTGAATTCAAGAGGTTGCTTACTCTTGTTTTGAGTTTTCAGTTTAGGGGATTGTAATCTTATTTTGTTAAAACTGCTCCATTGTACTTAGTAAACGATAAATACTAAAACCACACTATGAAAAACGTTCCAATATCTTGATTTTTGTGCCACCAGCCAAAATTGAGGACTAGTTCAGTATTTCTCGATGGGCACTATTTAAAACaacaaccattttaatcacatctCCAAACTTTCATTAACTATGCATATTCtcacctgcactgtaaaaatatttgatCAATTAGTAATGACAtagtaacttattaaactaagctaATCATGTTCTAACTCAATTTTAGAAGTTACAGAAGCTGTTTTaagtctgtttaacataatttaaattcaattaactcacaaggttaatttaattcagcttaataATTTATGGCaaccatgatttttttaaagtgtagattTAGTGCCAGCAGATCAACACTATGAATACAAAACTGTTGAAGTAATTCTCCTCAATAGCCATAAAGCATTTATATTTTcagaattataatatttaaaataggcaaagGGAACACGATGAGGATTGGCCATTACAGTCAGCATTTAACTGGCCTGGGGCCTGAGCATAAGGCTCTTTTATTCATGCTGACTGATGATCTTCACTGGAACTTTGCAAAGGTTTAATCAATAGACAGAGCAGGGTATCAATAAAGTGTCCCATTTGTTTTAAACTAATATCAGCTATGTGAAATACCTTTACATCAAGAAACCCCTTTAACATCTCTGGTTTGTGGTGCAGGCTAAAGGAGGGGCTTTTGCTTTTTACTCCTACAACTGATTATTAAATTGATTTGCtcgtatttttcaaaatatactgACTGTCAGTATTTGACCtagatttttaaatcattttgctTAGTGGGTATTAAAACAGATATACCTAGGCCTTTCTTTCCGCTAGCTGTAAACGAGTCATCTGGAAACACCATAGGTACCAAAGAGCAGGTACTGTACAAACAACATAGAACATACAGTAGCAGAAAACACCAACCAGGCATTTACAACAGCAAACATATATCCTCTATAGCCTGAACACCTTAGCAAAGCATTTACAGCATCTAGCAACAATATCAAAaagctgtatttttatattatgtatatatttttactcCCACGCAGCTCATTGTGATCCCTCAATTTGAAAATACCTGGTCTAGATCATTGAAGTAAACAACTTCACACTTTACAGAACACTCTTGCAAGCACATAAAATGTTTGCAACACTGTATTGAacattcacatttttactgcattggctttttgcaattctaatttattcacagctttgtgtaaatcattcatgaactTGTTCAATTTAGAGGACATTttcagggaaaaaaagattttaaaaatgttctaaAATTAGCTGATTTTGACAAactatttttgtatgtaatgactcaagtaatgaaataagGTCTGTTAGTTTataatgactattcagcattcacaagtttagttaattctGACTGGCATGACACTGTAAGTAAATAAGAATGTTATATAACAGCAAAGAGTTGTACAAAAGCAATTGAttcatgtccaaaagcatttgcaatttgtttaaAGGAATGAGAAACCCCTACTATGATGTGCAGAGATGagtaattgttttgagaaatgcattaattgttttgcaaatgtaaatagtgttgtgagaaatgcaccaaagccactgagaaaaactgtaacaaagACTCCAGTGTTCAAAAC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1902494 catalytic complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022135 lncRNA downstream 2881 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 63377 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020702 lncRNA downstream 122507 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00022134 lncRNA downstream 322914 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00021792 lncRNA downstream 806545 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00020715 lncRNA upstream 61774 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00022136 lncRNA upstream 411108 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020732 lncRNA upstream 589993 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 631202 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 1075023 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00020704 mRNA downstream 2569 16554687 ~ 16590780 (-) False XLOC_010566
TCONS_00020705 mRNA downstream 2860 16556526 ~ 16590489 (-) False XLOC_010566
TCONS_00020700 mRNA downstream 71336 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA downstream 112303 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020699 mRNA downstream 252322 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020710 mRNA upstream 1437 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020709 mRNA upstream 1437 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020708 mRNA upstream 1437 16605517 ~ 16619897 (-) False XLOC_010569
TCONS_00020711 mRNA upstream 2590 16606670 ~ 16619854 (-) True XLOC_010569
TCONS_00020712 mRNA upstream 17162 16621242 ~ 16649764 (-) False XLOC_010570
TCONS_00020706 other downstream 19819 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 778848 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2196650 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2634464 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2775409 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020716 other upstream 73628 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 515984 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 517918 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 640828 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 643142 17247222 ~ 17247363 (-) True XLOC_010583

Expression Profile

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