RNA id: TCONS_00020709


Basic Information

Item Value
RNA id TCONS_00020709
length 3177
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_010569
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16605517 ~ 16619897 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAGCTTTCAGAAAGCTTTAGCTACAGAGAGAACTAACAGCATGTGTTTCTCTGTGGTCAGTGTTGTGCTATTGCTGTTCATTTTGTGGATGCTTGTGGTCAAGTTTAGGAGACAGAGCCACAGACGAACTGATGGCGTTGCCAAAGAAAACAACAAACCAGAAGCTGTTTTTCCCAAACTCCTGCATTCACTCTATAAGCTCTTCTTCAGTACCGTTTCTCCAACTATTTCTGGTCCTCGCTCTCTCCCTTTGCTGGGAAACATGCTGGATCTCGCCCAAGATCATCTGCCCATCCACTTGACTGCATTGGCAAAATGCTATGGAAATATTTATCGGCTTAACTGTGGCAGCACAACTATGGTTGTTTTAAACAACAGTGAGATTATCCGTGAGGCTCTAGTTAAGAAATGGTCTGACTTTGCTGGGAGGCCTCATTCATACACCGGTATTTCCAACTGGcatatttttttcaagaatgtctacattatttatgtgtatattattatatCTGTTTCTTGTTCCTTAATCCTAGGTGATATAGTGTCTAGAGGAGGACGAACCATTTCTTTGGGTGATTTCAGTGAGGAATGGAAAGCTCATAGACGTGTCACCCACAGTGCTCTGCAGCGCTGCACCACTGACTCCCTGCACTCTGTCATAGAAAAGCAAGCACAACATCTCTGTCAGGTGTTACGAGACTACAGTGGAAAGGCTGTGGATTTATCGGAGGACTTTACTGTGGCTTCGAGTAATGTCATCACAACTCTGACCTTCAGCAAAGCTTATGATAAAAGTTCAGCAGAGCTGCAGAAGCTGCAGGAGTGTTTGAATGAGATTGTTTCTCTCTGGGGTTCACCCTGGATCTCAGCCCTGGACTCCTTCCCTCTGCTCAGGGTAACATGCTTGATTTTATGTAGTATTGATAATCATTTTGATCCATACATTGTGGATGTATTTTATTTGtactctttaaaaaataataattctttgcAGAAATTTCCCAACCCCCCATTCTCTCGTCTAATGAAGGAGGTGGCCAGACGCGATGAGCTGATAGGAAAACACATAGAGGAGTTTAAGAAAAGTGAGCATAAAGAAGGTGGCACACTGACTTCTTCACTCCTGAAGTGTCTTGAACCACAACAAGGGGCAGCCAATCACACgACTCTGACAGACACTCATGTGCATATGACCACGGTGGATCTGCTGATTGGAGGGACAGAAACTATTGCTGCCTTGCTTAACTGGACTGTGGCCTTCCTTTTACACAGGCCAGAGGTTCAGGATAAAGTGTATGAGGAGCTGTGCTGTATGCTGGATGTGCGGCACCCTCAGTACAGTGACCGACACAAACTGCCATATCTGTGTGCTCTGATCAGTGAGATGTTACGACTGCGACCTGTAGCTCCCCTCGCCGTACCACACAGAGCCATACGAAACAGCAGCATTGCAGGGCATTTCATTCCCAAGAATACAATTATCATCCCTAATCTTTACGGAGCTCACCATGATCCAGAAGTCTGGGATGATCCATATAGCTTCAAACCAGAACGCTTTTTGGAAGGTGGTGGCGGGTCCCTTCGTTCTCTGATACCTTTTGGAGGAGGCGCACGACTGTGTTTGGGAGAGGCGGTAGCCAAAATGGAGATGTTTCTCTTCACGGCATATCTCCTGCGAGAGTTCAAGTTCCTGCCTGCCAGTAAAGAAGAGCCACTGCCTGAACTGCGAGGTGTCGCCAGCGTGGTTCTTAAAGTTAAACCATATACAGTTATAGCACACCCCAGAGAACAGTAGATGCTTATGAGGAGTAAGTTGCAGTTGTCTGGCTAGGTTTATGGATAATATTAGTTGAATGTTTATTCTGCAGTGTAAAATACATCAGTAGTATGTACAGTAACTCATCATTTTTCAATGTAGTCTCATGGCATATCTTAACTTTTTTTGTATTCAGATCTCATTTATAGATTTAATACAACTCATGTATTCATGAACTACTGACGGTTGGTTTTAGAGGTAGGGTTTAGGGGTACAACTCCTAATGAAATTGTTTGAATTTGTATgaagtgttgcatgcaaaactgttgcaaacaatttatttttgttgaattaaaacaaacaaattaaattgaataatgttcaacttaatttgttttactaaattcaacacaaattgtttacaactaaTTAACGTAAAAAaactgagtaaatccaaggaatcatctttgaataattttttttttcagtgtacataaaATAGTTTAGTTTCCATGTGAGATTGAGCTGATTTTTTCTTGCGTCTTGAAAAAGGTTGATAACAAGTAGCTACATGAGACTACAGAAGTTAAAAACAAGACAAGCTATCTACTGGTGAGTTTACTTTTAAGACTTTAATTGTTGCTTATACCCATAATCTTGCAAAATATTCAAACTCAGACTCTGAATGGAGATTGAAAATGTTGTCTGAAATGCTGGCCATGTTGAAGTTAAGGTGTAGTTCATTTATAGCTCAAATATAGCGCTTTACGAATTTGGCTAAACACTGTACTGCTTTTGTCATAGACAGAGACCATCATAATTTAGGATTTTTGGGGGGTAAATTAACAACAAGTAATAACACTGGGctataattcactgatgttattttattgtctgtAATGAGAATTTAATTTTTGGAGAAAATGCTATAATTAGACTGTGGAGTATATAGTAGTAAAGAAATTCTTTGTAGGATTTTCTTTGTGTTGGTGTTGGTGGGGGGAGGGGTGGGGGGCTGAAACTGAATTGTAAAAAACCTCAGTATCTATTAAATTCTTTGATTGaaatgtttttcattcattctattggcttaatcactttatttatcagaggtcgccacagcggaatgaaccaccaactgatccagcatatgttttatgcagcagaagcccttccagccgaaacccagCACTAAGAAACAatcacgcattcacacacatacaccatggccaatttagcttattcaattcacttacagcacatgtctttggattgtgggagaaaccagagcacctggaggaaacccacatgaagatGGGGAGCACAggaaaacttcacacagaaatgccaactgacccagctggggctagaaccagcaacctatttttgtgaggtgacagtgctaacctctgagccac

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0006704 glucocorticoid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004509 steroid 21-monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070103-6 Predicted to enable heme binding activity and steroid 21-monooxygenase activity. Acts upstream of or within glucocorticoid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; head; and renal system. Human ortholog(s) of this gene implicated in congenital adrenal hyperplasia. Orthologous to human CYP21A2 (cytochrome P450 family 21 subfamily A member 2).

Ensembl:

ensembl_id ENSDART00000183231

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020707 lncRNA downstream 1437 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 15049 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 75545 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020702 lncRNA downstream 134675 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00022134 lncRNA downstream 335082 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020715 lncRNA upstream 45957 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00022136 lncRNA upstream 395291 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020732 lncRNA upstream 574176 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 615385 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 1059206 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00020704 mRNA downstream 14737 16554687 ~ 16590780 (-) False XLOC_010566
TCONS_00020705 mRNA downstream 15028 16556526 ~ 16590489 (-) False XLOC_010566
TCONS_00020700 mRNA downstream 83504 16358348 ~ 16522013 (-) False XLOC_010564
TCONS_00020701 mRNA downstream 124471 16358380 ~ 16481046 (-) False XLOC_010564
TCONS_00020699 mRNA downstream 264490 16318028 ~ 16341027 (-) True XLOC_010563
TCONS_00020712 mRNA upstream 1345 16621242 ~ 16649764 (-) False XLOC_010570
TCONS_00020713 mRNA upstream 11675 16631572 ~ 16643377 (-) True XLOC_010570
TCONS_00020714 mRNA upstream 45306 16665203 ~ 16701718 (-) False XLOC_010571
TCONS_00020717 mRNA upstream 137322 16757219 ~ 16761164 (-) True XLOC_010572
TCONS_00020718 mRNA upstream 387192 17007089 ~ 17056630 (-) False XLOC_010573
TCONS_00020706 other downstream 31987 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 791016 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2208818 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 2646632 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 2787577 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020716 other upstream 57811 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 500167 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 502101 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 625011 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 627325 17247222 ~ 17247363 (-) True XLOC_010583

Expression Profile

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