RNA id: TCONS_00020721


Basic Information

Item Value
RNA id TCONS_00020721
length 2446
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_010575
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17102103 ~ 17116499 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtatggGGAGAACACTCCAGGTTTCTACAATGAGTAAGTGGGTATTTCACAAAAATGTACTAGTTGTTTGTTGCTATATGACCTAAAAATATGTTCAGAATCAATAATCACAAATCTATTCTTGTATGAAAATTGCAAGAGAGTCAGACAAATCTCCTAGAAATATGttcaaaatcaataataaattgcAATAAAGAGAATTTCAATtgtaaacagacaaattgctcattgctcattttaaatagaagAAGTGTATTTTATTTGCAGCTTCACACAAACATGAGTTCAtctatgtatattttatataaaacatttcaaaactgCTCCAATTAGACTCACAGTTTGCATCTTCTTAGCCTTATTCAAACCAGTAATAATGACACatcaattattattatagaaTGTAAAGctataatctctctctctctctctctctccaaaagCAGGTGAAGGGCAGCATAAGAAAGAGAGGGAGGAGAATGACAGTAAGACATCAGGTGAGGAAACAATGATATGAGATGAGCAGTAAAGAACACAGCCTGGCAGAAGACACTGAAATTGAGTTTGAAAGCGGAGATTTTGGATTTGAACTACTGTTAAGatgCGTACGACTGTGTTATCTGTAGCCTTGGTGATGCTGACAGGTCATCTGATATATGGCCTCCCTATGCATAACGGAAAGGTGAGAAACGGCAGAGAAGCATCAAACAATTGCAGCGATAGTTGTCCAGCAGgattTTACAAAGATGATTGCAAATGTCATCAGTGCAACCATGATTTCTTCAATAATAGGGAAAATGAAGACAGTTGCACCCGCTGCTTTCAGAGATGCACACATGaattcAAAATGGAGAAGGTCAAGGAGTGCACAACCACGTCAGATGTAGAGTGTCGCTGTCAACGTGGATATACATGTGCCTCAAAAGATCAATACACAGGCCAGTGTGAAAGCTGTGTTCCCAACATCACCCCAGACCCCACACCATTACCCCAGTCCTACACCTCCACTGACATAAGTTCCAAGGTCCCTTCATCCACTCTTTCATTCAATGGCTTTACTGACAGTCCAATGGATTACAAAGATTACTTGTtatggactttatttggactcaTTTCCTCAATTCTATCCATCATCATCCTCACGCTGATCCTCCGGTTCTGCAGTAAGAAAGAGAAGGAATGTTTAAAGCACATTGTCAGGCAGTGCTCATTGGGAGCAGATGTGGACAGTGAGGTCACGCCTCCCAGCCAACCAGATGAGCAACCTCATACCCATGAAATGTTGTCAGATGTCTGCTCACCAACCAATCACAACACAGACCCTTTTCATCAGCCAGTGAGCCAAGAGCAAGCTGTTCCTCCAGCTGGTAATTTAGGTCCTCTTCACATCTACGGCCCCCAGACAGTCTTTGTTAGCTTGCTCAATCATTTTGCAGGAGAGCAAAAAGCACACGAACAGGGCGAATCTCTAAACAGCAGTAGCATGTCCTACCCTCAGTCTCCCCCCGTCCATCTCTCAGAAGAAGAAAGAAGCGGAGAGGACGATTTCATCTTCTTTCCATCTCAGGAGCAAGGAAAAGAGTGCCAcatttccaaagaagaggtgctATGAGGAATCACAGGAGACTTCCCGTTTCTGTTCTTTTTCCGTACTGTTCTGCTGCTGTGAGCTTTGTTCTACCTGCTGCCTCATGAGTGTTCAGTATTAAAACTCTAAGCTTGGCAGGGGATTTCATTGAGAGCAACAGAGAAAGATCTGGCCATCTGACTAGTAGTATGGATGACAAAATTGATGCGCAAGAGCTTGACAGTTTATGCTAGCTTTGAAATATCAGTTTGTACTGTCTGTTTATCTATGCTGAAGTTTGTTTGAAGAGTCGAGTGCACAGGCTTTCAGGTCTTAGGTTGGATAAGTCtcaggaagaaaagaaaaagtggaatctttttttctttttgcttgttttaagtgtTTGAAGGCAATAAGCAGCTCTAAGACACTCAAAAATTCTCatatatgataaaatatttattttagttgaagCATCATGCTTGATTTCTAAAGAGacttaatatgtttttaattatgaAGCTGGTTGTGTCTTGACagttatgatttttatttatttatagctgtTAAACATTGGATTACAATTGTGCGAAACAGTTTTTTATGCTTGCACAAGTCCATGGCTGATGTTGTCATTGTACTTCCTCTTTTCTTAAATTATGTGGCAGATATGAttgatcatcaaaaaaaaaaaaaagaaaaatccctGACATTTTGATGGTGGTCTGAAAATGTCAACATTGTTTCTTCTTTCAGAACTCAATAATCATGGCGCACACAGTTTATCTTGTGTTATGTTTGTATTTGCTGTAACACATTTTTATAACCGTTATTAAATGTAAAGTGCAATATGatgaataaagttttatttttggtaTA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0036462 TRAIL-activated apoptotic signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-284 Predicted to be involved in TRAIL-activated apoptotic signaling pathway and positive regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

Ensembl:

ensembl_id ENSDART00000138983

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022136 lncRNA downstream 69292 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 435346 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 498023 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 511635 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00020703 lncRNA downstream 572131 16526975 ~ 16529972 (-) True XLOC_010565
TCONS_00020732 lncRNA upstream 77574 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00020736 lncRNA upstream 118783 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00021793 lncRNA upstream 562604 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 588331 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 588331 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00020719 mRNA downstream 29542 17060758 ~ 17072561 (-) False XLOC_010574
TCONS_00020720 mRNA downstream 29663 17062091 ~ 17072440 (-) True XLOC_010574
TCONS_00020718 mRNA downstream 45473 17007089 ~ 17056630 (-) False XLOC_010573
TCONS_00020717 mRNA downstream 340939 16757219 ~ 16761164 (-) True XLOC_010572
TCONS_00020714 mRNA downstream 400385 16665203 ~ 16701718 (-) False XLOC_010571
TCONS_00020723 mRNA upstream 5487 17121986 ~ 17162843 (-) False XLOC_010577
TCONS_00020725 mRNA upstream 5653 17122152 ~ 17162485 (-) True XLOC_010577
TCONS_00020726 mRNA upstream 46694 17163193 ~ 17188294 (-) False XLOC_010578
TCONS_00020727 mRNA upstream 47118 17163617 ~ 17175731 (-) True XLOC_010578
TCONS_00020728 mRNA upstream 73340 17189839 ~ 17197669 (-) False XLOC_010579
TCONS_00020716 other downstream 409836 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020706 other downstream 528573 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 1287602 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020674 other downstream 2705404 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 3143218 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020722 other upstream 3565 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 5499 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020737 other upstream 128409 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020738 other upstream 130723 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020757 other upstream 589399 17705898 ~ 17705987 (-) True XLOC_010592

Expression Profile

//